Davy Weissenbacher

Orcid: 0000-0001-8331-3675

According to our database1, Davy Weissenbacher authored at least 33 papers between 2004 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition.
Database J. Biol. Databases Curation, February, 2023

2022
Overview of the Seventh Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2022.
Proceedings of The Seventh Workshop on Social Media Mining for Health Applications, 2022

2021
Active neural networks to detect mentions of changes to medication treatment in social media.
J. Am. Medical Informatics Assoc., 2021

DeepADEMiner: a deep learning pharmacovigilance pipeline for extraction and normalization of adverse drug event mentions on Twitter.
J. Am. Medical Informatics Assoc., 2021

Addressing Extreme Imbalance for Detecting Medications Mentioned in Twitter User Timelines.
Proceedings of the Artificial Intelligence in Medicine, 2021

2020
GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography.
Bioinform., 2020

2019
Towards scaling Twitter for digital epidemiology of birth defects.
npj Digit. Medicine, 2019

Deep neural networks ensemble for detecting medication mentions in tweets.
J. Am. Medical Informatics Assoc., 2019

SemEval-2019 Task 12: Toponym Resolution in Scientific Papers.
Proceedings of the 13th International Workshop on Semantic Evaluation, 2019

Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature.
Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019


2018
Social media mining for birth defects research: A rule-based, bootstrapping approach to collecting data for rare health-related events on Twitter.
J. Biomed. Informatics, 2018

Automatically Detecting Self-Reported Birth Defect Outcomes on Twitter for Large-scale Epidemiological Research.
CoRR, 2018

GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records.
Bioinform., 2018

Deep neural networks and distant supervision for geographic location mention extraction.
Bioinform., 2018

2017
Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research.
Database J. Biol. Databases Curation, 2017

2016
A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records.
J. Am. Medical Informatics Assoc., 2016

Automatic Prediction of Linguistic Decline in Writings of Subjects with Degenerative Dementia.
Proceedings of the NAACL HLT 2016, 2016

2015
Knowledge-driven geospatial location resolution for phylogeographic models of virus migration.
Bioinform., 2015

DIEGOLab: An Approach for Message-level Sentiment Classification in Twitter.
Proceedings of the 9th International Workshop on Semantic Evaluation, 2015

Tree-Structured Named Entities Extraction from Competing Speech Transcriptions.
Proceedings of the Natural Language Processing and Information Systems, 2015

2014
Natural Language Processing Methods for Enhancing Geographic Metadata for Phylogeography of Zoonotic Viruses.
Proceedings of BioNLP, Baltimore, Maryland, USA, 2014

2013
Which Factors Contribute to Resolving Coreference Chains with Bayesian Networks?.
Int. J. Comput. Linguistics Appl., 2013

2011
Understand the effects of erroneous annotations produced by NLP pipelines, a case study on the pronominal anaphora resolution.
Trait. Autom. des Langues, 2011

2009
ASSIST : un moteur de recherche spécialisé pour l'analyse des cadres d'expériences.
Proceedings of the Actes de la 16ème conférence sur le Traitement Automatique des Langues Naturelles. Démonstrations, 2009

2008
Influence des annotations imparfaites sur les systèmes de Traitement Automatique des Langues, un cadre applicatif: la résolution de l'anaphore pronominale. (Effects of imperfect annotations on Natural Language Processing systems, an applicative case study: the pronominal anaphora resolution).
PhD thesis, 2008

2007
Les réseaux bayésiens : un formalisme adapté au traitement automatique des langues ?
Rev. d'Intelligence Artif., 2007

Identifier les pronoms anaphoriques et trouver leurs antécédents : l'intérêt de la classification bayésienne.
Proceedings of the Actes de la 14ème conférence sur le Traitement Automatique des Langues Naturelles. Articles longs, 2007

2006
The ALVIS Format for Linguistically Annotated Documents.
Proceedings of the Fifth International Conference on Language Resources and Evaluation, 2006

Bayesian Network, a Model for NLP?
Proceedings of the EACL 2006, 2006

Une infrastructure pour l'annotation linguistique de documents issus du web : le projet ALVIS.
Proceedings of the Apprentissage Artificiel et Fouille de Données, 2006

2004
La relation de synonymie en génomique.
Proceedings of the Actes de la 11ème conférence sur le Traitement Automatique des Langues Naturelles. REncontres jeunes Chercheurs en Informatique pour le Traitement Automatique des Langues (Posters), 2004

Event-Based Information Extraction for the Biomedical Domain: the Caderige Project.
Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications, 2004


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