Zhihao Yang

According to our database, Zhihao Yang authored at least 206 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Predicting Protein Functions Based on Heterogeneous Graph Attention Technique.

Yingwen Zhao, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

IEEE J. Biomed. Health Informatics, April, 2024

A dynamic spatiotemporal model for fall warning and protection.

Shengqian Xu, Zhihao Yang, Daoyuan Wang, Yang Tang, Jian Lin, Zenghui Gu, Gangmin Ning

Medical Biol. Eng. Comput., April, 2024

Dual Regression-Enhanced Gaze Target Detection in the Wild.

Xinming Wang, Hanlin Zhang, Zhiyong Wang, Wei Nie, Zhihao Yang, Weihong Ren, Qiong Xu, Xiu Xu, Honghai Liu

IEEE Trans. Cybern., January, 2024

From Retrieval to Generation: A Simple and Unified Generative Model for End-to-End Task-Oriented Dialogue.

Zeyuan Ding, Zhihao Yang, Ling Luo, Yuanyuan Sun, Hongfei Lin

Proceedings of the Thirty-Eighth AAAI Conference on Artificial Intelligence, 2024

2023

Hyperbolic hierarchical knowledge graph embeddings for biological entities.

Nan Li, Zhihao Yang, Yumeng Yang, Jian Wang, Hongfei Lin

J. Biomed. Informatics, November, 2023

Gait Recognition Based on Minirocket with Inertial Measurement Units.

Jianjun Yan, Weixiang Xiong, Li Jin, Jinlin Jiang, Zhihao Yang, Jiangtao Shi, Shuai Hu

Int. J. Humanoid Robotics, October, 2023

RDKG-115: Assisting drug repurposing and discovery for rare diseases by trimodal knowledge graph embedding.

Chaoyu Zhu, Xiaoqiong Xia, Nan Li, Fan Zhong, Zhihao Yang, Lei Liu

Comput. Biol. Medicine, September, 2023

A Self-Supervised Framework for Learning Biological Entities Representation by Fusing Class Information.

Nan Li, Zhihao Yang, Jian Wang, Hongfei Lin

IEEE J. Biomed. Health Informatics, August, 2023

Local discriminative graph convolutional networks for text classification.

Bolin Wang, Yuanyuan Sun, Yonghe Chu, Changrong Min, Zhihao Yang, Hongfei Lin

Multim. Syst., August, 2023

Few-shot biomedical named entity recognition via knowledge-guided instance generation and prompt contrastive learning.

Peng Chen, Jian Wang, Hongfei Lin, Di Zhao, Zhihao Yang

Bioinform., August, 2023

ADPG: Biomedical entity recognition based on Automatic Dependency Parsing Graph.

Yumeng Yang, Hongfei Lin, Zhihao Yang, Yijia Zhang, Di Zhao, Shuaiheng Huai

J. Biomed. Informatics, April, 2023

Improving Protein Function Prediction by Adaptively Fusing Information From Protein Sequences and Biomedical Literature.

Yingwen Zhao, Zhihao Yang, Yongkai Hong, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

IEEE J. Biomed. Health Informatics, February, 2023

Knowledge Guided Attention and Graph Convolutional Networks for Chemical-Disease Relation Extraction.

Yi Sun, Jian Wang, Hongfei Lin, Yijia Zhang, Zhihao Yang

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Knowledge Adaptive Multi-Way Matching Network for Biomedical Named Entity Recognition via Machine Reading Comprehension.

Peng Chen, Jian Wang, Hongfei Lin, Yijia Zhang, Zhihao Yang

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Xpert: Empowering Incident Management with Query Recommendations via Large Language Models.

Yuxuan Jiang, Chaoyun Zhang, Shilin He, Zhihao Yang, Minghua Ma, Si Qin, Yu Kang, Yingnong Dang, Saravan Rajmohan, Qingwei Lin, Dongmei Zhang

CoRR, 2023

Taiyi: A Bilingual Fine-Tuned Large Language Model for Diverse Biomedical Tasks.

Ling Luo, Jinzhong Ning, Yingwen Zhao, Zhijun Wang, Zeyuan Ding, Peng Chen, Weiru Fu, Qinyu Han, Guangtao Xu, Yunzhi Qiu, Dinghao Pan, Jiru Li, Hao Li, Wenduo Feng, Senbo Tu, Yuqi Liu, Zhihao Yang, Jian Wang, Yuanyuan Sun, Hongfei Lin

CoRR, 2023

Development of Hybrid-Actuator Robotic Exoskeleton Based on Gesture Signal Recognition Algorithm for the Rehabilitation of Dysfunctional Finger.

Shixian Zhao, Jincan Lei, Qiheng Tian, Zhihao Yang, Jing Huang

IEEE Access, 2023

Simple Approach for Aspect Sentiment Triplet Extraction Using Span-Based Segment Tagging and Dual Extractors.

Dongxu Li, Zhihao Yang, Yuquan Lan, Yunqi Zhang, Hui Zhao, Gang Zhao

Proceedings of the 46th International ACM SIGIR Conference on Research and Development in Information Retrieval, 2023

Research on Segmentation Algorithm for Vertebral CT Images Based on Spatial Configuration-Net and U-Net Deep Learning Model.

Zhihao Yang, Gefei Jia, Shibo Wang, Yutao Wang, Guoyan Bai, Siyu Tian, Shangli Tang

Proceedings of the 2023 4th International Symposium on Artificial Intelligence for Medicine Science, 2023

ODEE: A One-Stage Object Detection Framework for Overlapping and Nested Event Extraction.

Jinzhong Ning, Zhihao Yang, Zhizheng Wang, Yuanyuan Sun, Hongfei Lin

Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence, 2023

Improving Stability of Gaze Target Detection in Videos.

Zhihao Yang, Xinming Wang, Zhiyong Wang, Qiong Xu, Xiu Xu, Honghai Liu

Proceedings of the 49th Annual Conference of the IEEE Industrial Electronics Society, 2023

Uplink Precoding Design for Coherent Paired Users in Multi-cell MIMO Systems.

Xiran Li, Fanggang Wang, Zhihao Yang, Qianhua Li

Proceedings of the IEEE Globecom Workshops 2023, 2023

TrajTrace: Tracing Moving Objects over Social Media.

Zhihao Yang, Yunqi Zhang, Songda Li, Qinhui Chen, Hui Zhao, Wei Cai, Xi Lin

Proceedings of the Database Systems for Advanced Applications, 2023

BokehOrNot: Transforming Bokeh Effect with Image Transformer and Lens Metadata Embedding.

Zhihao Yang, Wenyi Lian, Siyuan Lai

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2023

Lens-to-Lens Bokeh Effect Transformation. NTIRE 2023 Challenge Report.

Marcos V. Conde, Manuel Kolmet, Tim Seizinger, Tom E. Bishop, Radu Timofte, Xiangyu Kong, Dafeng Zhang, Jinlong Wu, Fan Wang, Juewen Peng, Zhiyu Pan, Chengxin Liu, Xianrui Luo, Huiqiang Sun, Liao Shen, Zhiguo Cao, Ke Xian, Chaowei Liu, Zigeng Chen, Xingyi Yang, Songhua Liu, Yongcheng Jing, Michael Bi Mi, Xinchao Wang, Zhihao Yang, Wenyi Lian, Siyuan Lai, Haichuan Zhang, Trung Hoang, Amirsaeed Yazdani, Vishal Monga, Ziwei Luo, Fredrik K. Gustafsson, Zheng Zhao, Jens Sjölund, Thomas B. Schön, Yuxuan Zhao, Baoliang Chen, Yiqing Xu, JiXiangNiu

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2023

Biomedical Named Entity Recognition Through Deep Reinforcement Learning.

Zhehuan Zhao, Bo Xu, Yuying Zou, Zhihao Yang, Menghan Wang, Hongfei Lin

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Joint Biomedical Entity and Relation Extraction with Unified Interaction Maps.

Haixin Tan, Zhihao Yang, Zeyuan Ding, Zhijun Wang, Ling Luo, Lei Wang, Yin Zhang, Wei Liu, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Joint Biomedical Entity and Relation Extraction Based on Triple Region Vertices.

Yuqi Liu, Zhihao Yang, Jinzhong Ning, Zhijun Wang, Ling Luo, Lei Wang, Yin Zhang, Wei Liu, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

OD-RTE: A One-Stage Object Detection Framework for Relational Triple Extraction.

Jinzhong Ning, Zhihao Yang, Yuanyuan Sun, Zhizheng Wang, Hongfei Lin

Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2023

2022

Two-stage robust optimization strategy for spatially-temporally correlated data centers with data-driven uncertainty sets.

Zhihao Yang

Dataset, December, 2022

The DLMP-based Equilibrium Optimization Strategy for Data Center Park with Spatial-Temporal Demand-side Resources.

Zhihao Yang

Dataset, October, 2022

A Semantic Network Encoder for Associated Fact Prediction.

Zhizheng Wang, Yuanyuan Sun, Xuyang Hu, Jiafeng Zhao, Zhihao Yang, Hongfei Lin

IEEE Trans. Knowl. Data Eng., 2022

EPIHC: Improving Enhancer-Promoter Interaction Prediction by Using Hybrid Features and Communicative Learning.

Shuai Liu, Xinran Xu, Zhihao Yang, Xiaohan Zhao, Shichao Liu, Wen Zhang

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

An Adaptive Alternating Magnetic Interference Suppression (AAIS) Algorithm for Geomagnetic Vector Measurement.

Weilin Wang, Keyan Li, Zhihao Yang, Jun Chen, Linliang Miao, Jun Ouyang, Xiaofei Yang

Sensors, 2022

Global-locality preserving projection for word embedding.

Bolin Wang, Yuanyuan Sun, Yonghe Chu, Zhihao Yang, Hongfei Lin

Int. J. Mach. Learn. Cybern., 2022

A multi-view network for real-time emotion recognition in conversations.

Hui Ma, Jian Wang, Hongfei Lin, Xuejun Pan, Yijia Zhang, Zhihao Yang

Knowl. Based Syst., 2022

MRC4BioER: Joint extraction of biomedical entities and relations in the machine reading comprehension framework.

Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

J. Biomed. Informatics, 2022

Dependency multi-weight-view graphs for event detection with label co-occurrence.

Yan Wang, Jian Wang, Hongfei Lin, Yijia Zhang, Zhihao Yang

Inf. Sci., 2022

Manifold biomedical text sentence embedding.

Bolin Wang, Yuanyuan Sun, Yonghe Chu, Hongfei Lin, Di Zhao, Liang Yang, Chen Shen, Zhihao Yang, Jian Wang

Neurocomputing, 2022

Refining electronic medical records representation in manifold subspace.

Bolin Wang, Yuanyuan Sun, Yonghe Chu, Di Zhao, Zhihao Yang, Jian Wang

BMC Bioinform., 2022

Multimodal reasoning based on knowledge graph embedding for specific diseases.

Chaoyu Zhu, Zhihao Yang, Xiaoqiong Xia, Nan Li, Fan Zhong, Lei Liu

Bioinform., 2022

Optimal Reactive Power Dispatch of Distribution Network Considering Voltage Security.

Chenyu Xiong, Haoming Liu, Zhihao Yang, Jian Wang

Proceedings of the IEEE Symposium Series on Computational Intelligence, 2022

Dialogue Topic Extraction as Sentence Sequence Labeling.

Dinghao Pan, Zhihao Yang, Haixin Tan, Jiangming Wu, Hongfei Lin

Proceedings of the Natural Language Processing and Chinese Computing, 2022

Versatile Multi-stage Graph Neural Network for Circuit Representation.

Shuwen Yang, Zhihao Yang, Dong Li, Yingxue Zhang, Zhanguang Zhang, Guojie Song, Jianye Hao

Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022

Distribution Network Congestion Management with Internet Data Centers Using Bi-level Programming.

Zhihao Yang, Ming Ni, Haoming Liu, Anupam Trivedi, Dipti Srinivasan

Proceedings of the IEEE PES Innovative Smart Grid Technologies - Asia, 2022

Unsupervised Classification of Polarimetric SAR Images Based on Scattering Mechanism.

Zhihao Yang, Yan Chen, Yunping Chen, Youchun Lu

Proceedings of the IEEE International Geoscience and Remote Sensing Symposium, 2022

ND-NER: A Named Entity Recognition Dataset for OSINT Towards the National Defense Domain.

Xinyan Li, Dongxu Li, Zhihao Yang, Hui Zhao, Wei Cai, Xi Lin

Proceedings of the Neural Information Processing - 29th International Conference, 2022

A Coarse-to-Fine Human Visual Focus Estimation for ASD Toddlers in Early Screening.

Xinming Wang, Zhihao Yang, Hanlin Zhang, Zuode Liu, Weihong Ren, Xiu Xu, Qiong Xu, Honghai Liu

Proceedings of the Intelligent Robotics and Applications - 15th International Conference, 2022

Two Languages Are Better than One: Bilingual Enhancement for Chinese Named Entity Recognition.

Jinzhong Ning, Zhihao Yang, Zhizheng Wang, Yuanyuan Sun, Hongfei Lin, Jian Wang

Proceedings of the 29th International Conference on Computational Linguistics, 2022

Adaptive Multi-view Graph Convolutional Network for Gene Ontology Annotations of Proteins.

Yingwen Zhao, Zhihao Yang, Yongkai Hong, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Location-Guided Token Pair Tagger for Joint Biomedical Entity and Relation Extraction.

Yan Zhang, Jiru Li, Zhihao Yang, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

BioNER-CFEM: Biomedical Named Entity Recognition Based on Character Feature Enhancement with Multimodal Method.

Jinzhong Ning, Jiru Li, Zhihao Yang, Yuanyuan Sun, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Patient Condition Change Network for Safe Medication Recommendation.

Ruobing Li, Jian Wang, Hongfei Lin, Yuan Lin, Huiyi Lu, Zhihao Yang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

Lexicon Knowledge Boosted Interaction Graph Network for Adverse Drug Reaction Recognition From Social Media.

Zhiheng Li, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

IEEE J. Biomed. Health Informatics, 2021

Sentence representation with manifold learning for biomedical texts.

Di Zhao, Jian Wang, Hongfei Lin, Yonghe Chu, Yan Wang, Yi-Jia Zhang, Zhihao Yang

Knowl. Based Syst., 2021

Biomedical named entity recognition using BERT in the machine reading comprehension framework.

Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

J. Biomed. Informatics, 2021

Improving biomedical word representation with locally linear embedding.

Di Zhao, Jian Wang, Yonghe Chu, Yijia Zhang, Zhihao Yang, Hongfei Lin

Neurocomputing, 2021

Identifying adverse drug reaction entities from social media with adversarial transfer learning model.

Tongxuan Zhang, Hongfei Lin, Yuqi Ren, Zhihao Yang, Jian Wang, Xiaodong Duan, Bo Xu

Neurocomputing, 2021

Deep learning with language models improves named entity recognition for PharmaCoNER.

Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

BMC Bioinform., 2021

Biomedical cross-sentence relation extraction via multihead attention and graph convolutional networks.

Di Zhao, Jian Wang, Hongfei Lin, Xin Wang, Zhihao Yang, Yijia Zhang

Appl. Soft Comput., 2021

Adversarial transfer network with bilinear attention for the detection of adverse drug reactions from social media.

Tongxuan Zhang, Hongfei Lin, Yuqi Ren, Zhihao Yang, Jian Wang, Shaowu Zhang, Bo Xu, Xiaodong Duan

Appl. Soft Comput., 2021

ATM: Attribute-Based Privacy-Preserving Task Assignment and Incentive Mechanism for Crowdsensing.

Xiaoru Xu, Zhihao Yang, Yunting Xian

IEEE Access, 2021

Stochastic Delay Performance Guarantee in A Terminal-Edge Collaboration System.

Wenying Zhou, Zhihao Yang, Zhidu Li, Dapeng Wu

Proceedings of the 13th International Conference on Wireless Communications and Signal Processing, 2021

Focus on Interaction: A Novel Dynamic Graph Model for Joint Multiple Intent Detection and Slot Filling.

Zeyuan Ding, Zhihao Yang, Hongfei Lin, Jian Wang

Proceedings of the Thirtieth International Joint Conference on Artificial Intelligence, 2021

Chinese Medical Named Entity Recognition Based on Chinese Character Radical Features and Pre-trained Language Models.

Haixin Tan, Zhihao Yang, Jinzhong Ning, Zeyuan Ding, Qiming Liu

Proceedings of the International Conference on Asian Language Processing, 2021

Auto-learning Convolution-Based Graph Convolutional Network for Medical Relation Extraction.

Mengyuan Qian, Jian Wang, Hongfei Lin, Di Zhao, Yijia Zhang, Wentai Tang, Zhihao Yang

Proceedings of the Information Retrieval - 27th China Conference, 2021

High electric conducting 1D nanomaterial/polymer composite fibers for wearable biomedical sensing system.

Haiyang Lu, Zhihao Yang, Long Ba

Proceedings of the BIC 2021: International Conference on Bioinformatics and Intelligent Computing, 2021

TL-BERT: A Novel Biomedical Relation Extraction Approach.

Zhehuan Zhao, Yuying Zou, Yang Tian, Bo Xu, Zhihao Yang, Jian Wang, Hongfei Lin, Shimin Shan, Yu Liu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

SGAT: a Self-supervised Graph Attention Network for Biomedical Relation Extraction.

Qiming Liu, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jinzhong Ning

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Self-Supervised Learning with Heterogeneous Graph Neural Network for COVID-19 Drug Recommendation.

Haifeng Liu, Hongfei Lin, Chen Shen, Zhihao Yang, Jian Wang, Liang Yang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Co-Attentive Span Network with Multi-task learning for Biomedical Named Entity Recognition.

Peng Chen, Jian Wang, Hongfei Lin, Yijia Zhang, Zhihao Yang, Di Zhao, Hui Ma

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020

KGHC: a knowledge graph for hepatocellular carcinoma.

Nan Li, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

BMC Medical Informatics Decis. Mak., 2020

Attention guided capsule networks for chemical-protein interaction extraction.

Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

J. Biomed. Informatics, 2020

A neural network-based joint learning approach for biomedical entity and relation extraction from biomedical literature.

Ling Luo, Zhihao Yang, Mingyu Cao, Lei Wang, Yin Zhang, Hongfei Lin

J. Biomed. Informatics, 2020

Exploiting adversarial transfer learning for adverse drug reaction detection from texts.

Zhiheng Li, Zhihao Yang, Ling Luo, Yang Xiang, Hongfei Lin

J. Biomed. Informatics, 2020

FBSN: A hybrid fine-grained neural network for biomedical event trigger identification.

Yufeng Diao, Hongfei Lin, Liang Yang, Xiaochao Fan, Di Wu, Zhihao Yang, Jian Wang, Kan Xu

Neurocomputing, 2020

Sensitivity-controlled event trigger identification in multi-level biomedical context.

Chen Shen, Hongfei Lin, Zhengguang Li, Yonghe Chu, Zhihao Yang

Int. J. Data Min. Bioinform., 2020

Incorporating representation learning and multihead attention to improve biomedical cross-sentence n-ary relation extraction.

Di Zhao, Jian Wang, Yi-Jia Zhang, Xin Wang, Hongfei Lin, Zhihao Yang

BMC Bioinform., 2020

Biomedical document triage using a hierarchical attention-based capsule network.

Jian Wang, Mengying Li, Qishuai Diao, Hongfei Lin, Zhihao Yang, Yi-Jia Zhang

BMC Bioinform., 2020

Exploiting sequence labeling framework to extract document-level relations from biomedical texts.

Zhiheng Li, Zhihao Yang, Yang Xiang, Ling Luo, Yuanyuan Sun, Hongfei Lin

BMC Bioinform., 2020

Chemical-protein interaction extraction via Gaussian probability distribution and external biomedical knowledge.

Cong Sun, Zhihao Yang, Leilei Su, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

Bioinform., 2020

Pricing Strategy of Multi-Energy Provider Considering Integrated Demand Response.

Zhihao Yang, Ming Ni, Haoming Liu

IEEE Access, 2020

Interactive Self-Attentive Siamese Network for Biomedical Sentence Similarity.

Zhengguang Li, Hongfei Lin, Wei Zheng, Michael M. Tadesse, Zhihao Yang, Jian Wang

IEEE Access, 2020

Risk Assessment of Cyber Attacks on Power Grids Considering the Characteristics of Attack Behaviors.

Biyun Chen, Zhihao Yang, Yiyi Zhang, Yanni Chen, Junhui Zhao

IEEE Access, 2020

Power Decoupling Control Strategy of 35 kV Cascaded H-Bridge Energy Storage System.

Xiaojun Zhu, Yan Li, Yibin Tao, Qun Zhang, Jinhua Xue, Chen Zhou, Zhihao Yang

Proceedings of the IEEE International Conference on Networking, Sensing and Control, 2020

Joint Entity and Relation Extraction for Legal Documents with Legal Feature Enhancement.

Yanguang Chen, Yuanyuan Sun, Zhihao Yang, Hongfei Lin

Proceedings of the 28th International Conference on Computational Linguistics, 2020

Gated iterative capsule network for adverse drug reaction detection from social media.

Tongxuan Zhang, Hongfei Lin, Bo Xu, Yuqi Ren, Zhihao Yang, Jian Wang, Xiaodong Duan

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Star-BiLSTM-LAN for Document-level Mutation-Disease Relation Extraction from Biomedical Literature.

Yuan Xu, Zhihao Yang, Yawen Song, Zhiheng Li, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Extracting biomedical relations via a multi-head attention based graph convolutional network.

Erniu Wang, Fan Wang, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

A Graph-boosted Framework for Adverse Drug Event Detection on Twitter.

Chen Shen, Hongfei Lin, Zhiheng Li, Yonghe Chu, Zhengguang Li, Zhihao Yang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Drug Repositioning for SARS-CoV-2 Based on Graph Neural Network.

Haifeng Liu, Hongfei Lin, Chen Shen, Liang Yang, Yuan Lin, Bo Xu, Zhihao Yang, Jian Wang, Yuanyuan Sun

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Cross2Self-attentive Bidirectional Recurrent Neural Network with BERT for Biomedical Semantic Text Similarity.

Zhengguang Li, Hongfei Lin, Chen Shen, Wei Zheng, Zhihao Yang, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019

Detecting adverse drug reactions from social media based on multi-channel convolutional neural networks.

Chen Shen, Hongfei Lin, Kai Guo, Kan Xu, Zhihao Yang, Jian Wang

Neural Comput. Appl., 2019

Integrating shortest dependency path and sentence sequence into a deep learning framework for relation extraction in clinical text.

Zhiheng Li, Zhihao Yang, Chen Shen, Jun Xu, Yaoyun Zhang, Hua Xu

BMC Medical Informatics Decis. Mak., 2019

Intelligent multi-document summarization for biomedical literature by word embeddings and graph-based ranking.

Chen Shen, Hongfei Lin, Huihui Hao, Zhihao Yang, Jian Wang, Shaowu Zhang

J. Intell. Fuzzy Syst., 2019

Extracting drug-drug interactions with hybrid bidirectional gated recurrent unit and graph convolutional network.

Di Zhao, Jian Wang, Hongfei Lin, Zhihao Yang, Yijia Zhang

J. Biomed. Informatics, 2019

Neural network-based approaches for biomedical relation classification: A review.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yuanyuan Sun, Bo Xu, Zhehuan Zhao

J. Biomed. Informatics, 2019

Chemical-protein interaction extraction from biomedical literature: a hierarchical recurrent convolutional neural network method.

Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang

Int. J. Data Min. Bioinform., 2019

KeSACNN: a protein-protein interaction article classification approach based on deep neural network.

Ling Luo, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

Int. J. Data Min. Bioinform., 2019

Adverse drug reaction detection via a multihop self-attention mechanism.

Tongxuan Zhang, Hongfei Lin, Yuqi Ren, Liang Yang, Bo Xu, Zhihao Yang, Jian Wang, Yijia Zhang

BMC Bioinform., 2019

A supervised term ranking model for diversity enhanced biomedical information retrieval.

Bo Xu, Hongfei Lin, Liang Yang, Kan Xu, Yi-Jia Zhang, Dongyu Zhang, Zhihao Yang, Jian Wang, Yuan Lin, Fuliang Yin

BMC Bioinform., 2019

Chemical-protein interaction extraction via contextualized word representations and multihead attention.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yuanyuan Sun

Database J. Biol. Databases Curation, 2019

Biomedical event trigger detection with convolutional highway neural network and extreme learning machine.

Chen Shen, Hongfei Lin, Xiaochao Fan, Yonghe Chu, Zhihao Yang, Jian Wang, Shaowu Zhang

Appl. Soft Comput., 2019

Detection of protein complexes from multiple protein interaction networks using graph embedding.

Xiaoxia Liu, Zhihao Yang, Shengtian Sang, Hongfei Lin, Jian Wang, Bo Xu

Artif. Intell. Medicine, 2019

A Deep Learning Approach With Deep Contextualized Word Representations for Chemical-Protein Interaction Extraction From Biomedical Literature.

Cong Sun, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

IEEE Access, 2019

GrEDeL: A Knowledge Graph Embedding Based Method for Drug Discovery From Biomedical Literatures.

Shengtian Sang, Zhihao Yang, Xiaoxia Liu, Lei Wang, Hongfei Lin, Jian Wang, Michel Dumontier

IEEE Access, 2019

DUTIR at TREC 2019: Precision Medicine Track.

Jingkun Feng, Zhihao Yang, Zhiqiang Liu, Ling Luo, Hongfei Lin, Jian Wang

Proceedings of the Twenty-Eighth Text REtrieval Conference, 2019

Bi-directional Capsule Network Model for Chinese Biomedical Community Question Answering.

Tongxuan Zhang, Yuqi Ren, Michael Mesfin Tadessem, Bo Xu, Xikai Liu, Liang Yang, Zhihao Yang, Jian Wang, Hongfei Lin

Proceedings of the Natural Language Processing and Chinese Computing, 2019

Residual Connected Enhanced Sequential Inference Model for Natural Language Inference.

Yingdong Li, Jian Wang, Hongfei Lin, Shaowu Zhang, Zhihao Yang

Proceedings of the 14th IEEE International Conference on Intelligent Systems and Knowledge Engineering, 2019

Transfer Learning in Biomedical Named Entity Recognition: An Evaluation of BERT in the PharmaCoNER task.

Cong Sun, Zhihao Yang

Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, 2019

Disease Gene Prediction Based on Heterogeneous Probabilistic Hypergraph Ranking.

Feng Ding, Xiangjie Kong, Zhehuan Zhao, Feng Xia, Anfu Liu, Chenxu Bai, Bo Xu, Xiaoxia Liu, Shengtian Sang, Hongfei Lin, Zhihao Yang, Jian Wang

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018

Improve Biomedical Information Retrieval Using Modified Learning to Rank Methods.

Bo Xu, Hongfei Lin, Yuan Lin, Yunlong Ma, Liang Yang, Jian Wang, Zhihao Yang

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Exploring Answer Information for Question Classification in Community Question Answering.

Jian Wang, Hongfei Lin, Hualei Dong, Daping Xiong, Zhihao Yang

J. Multiple Valued Log. Soft Comput., 2018

A neural network approach to chemical and gene/protein entity recognition in patents.

Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Jian Wang, Hongfei Lin

J. Cheminformatics, 2018

An effective neural model extracting document level chemical-induced disease relations from biomedical literature.

Wei Zheng, Hongfei Lin, Zhiheng Li, Xiaoxia Liu, Zhengguang Li, Bo Xu, Yijia Zhang, Zhihao Yang, Jian Wang

J. Biomed. Informatics, 2018

A hybrid model based on neural networks for biomedical relation extraction.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Shaowu Zhang, Yuanyuan Sun, Liang Yang

J. Biomed. Informatics, 2018

SemaTyP: a knowledge graph based literature mining method for drug discovery.

Shengtian Sang, Zhihao Yang, Lei Wang, Xiaoxia Liu, Hongfei Lin, Jian Wang

BMC Bioinform., 2018

Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks.

Xiaoxia Liu, Zhihao Yang, Shengtian Sang, Ziwei Zhou, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Bo Xu

BMC Bioinform., 2018

Drug-drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths.

Yijia Zhang, Wei Zheng, Hongfei Lin, Jian Wang, Zhihao Yang, Michel Dumontier

Bioinform., 2018

An attention-based BiLSTM-CRF approach to document-level chemical named entity recognition.

Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Hongfei Lin, Jian Wang

Bioinform., 2018

Document triage for identifying protein-protein interactions affected by mutations: a neural network ensemble approach.

Ling Luo, Zhihao Yang, Hongfei Lin, Jian Wang

Database J. Biol. Databases Curation, 2018

WECA：A WordNet-Encoded Collocation-Attention Network for Homographic Pun Recognition.

Yufeng Diao, Hongfei Lin, Di Wu, Liang Yang, Kan Xu, Zhihao Yang, Jian Wang, Shaowu Zhang, Bo Xu, Dongyu Zhang

Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, Brussels, Belgium, October 31, 2018

DUTIR at the CCKS-2018 Task1: A Neural Network Ensemble Approach for Chinese Clinical Named Entity Recognition.

Ling Luo, Nan Li, Shuaichi Li, Zhihao Yang, Hongfei Lin

Proceedings of the Evaluation Tasks at the China Conference on Knowledge Graph and Semantic Computing (CCKS 2018), 2018

Full-attention Based Drug Drug Interaction Extraction Exploiting User-generated Content.

Bo Xu, Xiufeng Shi, Zhehuan Zhao, Wei Zheng, Hongfei Lin, Zhihao Yang, Jian Wang, Feng Xia

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Multipath2vec: Predicting Pathogenic Genes via Heterogeneous Network Embedding.

Bo Xu, Yu Liu, Shuo Yu, Lei Wang, Lei Liu, Hongfei Lin, Zhihao Yang, Jian Wang, Feng Xia

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Protein Complexes Detection Based on Global Network Representation Learning.

Bo Xu, Kun Li, Xiaoxia Liu, Delong Liu, Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Feng Xia

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Hierarchical Recurrent Convolutional Neural Network for Chemical-protein Relation Extraction from Biomedical Literature.

Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A Knowledge Graph based Bidirectional Recurrent Neural Network Method for Literature-based Discovery.

Shengtian Sang, Zhihao Yang, Xiaoxia Liu, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Protein-Protein Interaction Article Classification: A Knowledge-enriched Self-Attention Convolutional Neural Network Approach.

Ling Luo, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

PC-SENE: A node embedding based method for protein complex detection.

Xiaoxia Liu, Zhihao Yang, Shengtian Sang, Lei Wang, Yin Zhang, Hongfei Lin, Bo Xu, Yijia Zhang, Liang Yang, Kan Xu, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

HMNPPID: A Database of Protein-protein Interactions Associated with Human Malignant Neoplasms.

Qingqing Li, Zhihao Yang, Zhehuan Zhao, Ling Luo, Zhiheng Li, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A multi-task learning based approach to biomedical entity relation extraction.

Qingqing Li, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Improve Diversity-oriented Biomedical Information Retrieval using Supervised Query Expansion.

Bo Xu, Hongfei Lin, Liang Yang, Kan Xu, Yijia Zhang, Dongyu Zhang, Zhihao Yang, Jian Wang, Yuan Lin, Fuliang Yin

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017

A multiple distributed representation method based on neural network for biomedical event extraction.

Anran Wang, Jian Wang, Hongfei Lin, Jianhai Zhang, Zhihao Yang, Kan Xu

BMC Medical Informatics Decis. Mak., 2017

A parallel C4.5 decision tree algorithm based on MapReduce.

Yashuang Mu, Xiaodong Liu, Zhihao Yang, Xiaolin Liu

Concurr. Comput. Pract. Exp., 2017

DIGNiFI: Discovering causative genes for orphan diseases using protein-protein interaction networks.

Xiaoxia Liu, Zhihao Yang, Hongfei Lin, Michael Simmons, Zhiyong Lu

BMC Syst. Biol., 2017

An attention-based effective neural model for drug-drug interactions extraction.

Wei Zheng, Hongfei Lin, Ling Luo, Zhehuan Zhao, Zhengguang Li, Yijia Zhang, Zhihao Yang, Jian Wang

BMC Bioinform., 2017

Detecting Potential Adverse Drug Reactions Using Association Rules and Embedding Models.

Kai Guo, Hongfei Lin, Bo Xu, Zhihao Yang, Jian Wang, Yuanyuan Sun, Kan Xu

Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

A hybrid protein-protein interaction triple extraction method for biomedical literature.

Zhehuan Zhao, Zhihao Yang, Cong Sun, Lei Wang, Hongfei Lin

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016

A graph kernel based on context vectors for extracting drug-drug interactions.

Wei Zheng, Hongfei Lin, Zhehuan Zhao, Bo Xu, Yijia Zhang, Zhihao Yang, Jian Wang

J. Biomed. Informatics, 2016

A protein-protein interaction extraction approach based on deep neural network.

Zhehuan Zhao, Zhihao Yang, Hongfei Lin, Jian Wang, Song Gao

Int. J. Data Min. Bioinform., 2016

Biomedical event trigger detection based on convolutional neural network.

Jian Wang, Honglei Li, Yuan An, Hongfei Lin, Zhihao Yang

Int. J. Data Min. Bioinform., 2016

A method for predicting protein complex in dynamic PPI networks.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yiwei Liu, Shengtian Sang

BMC Bioinform., 2016

Construction of dynamic probabilistic protein interaction networks for protein complex identification.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang

BMC Bioinform., 2016

Drug drug interaction extraction from biomedical literature using syntax convolutional neural network.

Zhehuan Zhao, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang

Bioinform., 2016

Generating User-oriented Text Summarization Based on Social Networks Using Topic Models.

Bo Xu, Hongfei Lin, Huihui Hao, Zhihao Yang, Jian Wang, Shaowu Zhang

Proceedings of the Social Media Processing - 5th National Conference, 2016

Detecting Potential Adverse Drug Reactions from Health-Related Social Networks.

Bo Xu, Hongfei Lin, Mingzhen Zhao, Zhihao Yang, Jian Wang, Shaowu Zhang

Proceedings of the Natural Language Understanding and Intelligent Applications, 2016

Stability analysis of a hybrid multi-infeed HVDC system connected between two offshore wind farms and two power grids.

Li Wang, Zhi-Hao Yang, Anton V. Prokhorov

Proceedings of the 2016 IEEE Industry Applications Society Annual Meeting, 2016

DUTIR in BioNLP-ST 2016: Utilizing Convolutional Network and Distributed Representation to Extract Complicate Relations.

Honglei Li, Jianhai Zhang, Jian Wang, Hongfei Lin, Zhihao Yang

Proceedings of the 4th BioNLP Shared Task Workshop, BioNLP 2016, 2016

Disease-specific protein complex detection in the human protein interaction network with a supervised learning method.

Ziwei Zhou, Yingyi Gui, Zhihao Yang, Xiaoxia Liu, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

ML-CNN: A novel deep learning based disease named entity recognition architecture.

Zhehuan Zhao, Zhihao Yang, Ling Luo, Yin Zhang, Lei Wang, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Biomedical event extraction based on distributed representation and deep learning.

Anran Wang, Jian Wang, Hongfei Lin, Jianhai Zhang, Zhihao Yang, Kan Xu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

CIDExtractor: A chemical-induced disease relation extraction system for biomedical literature.

Zhiheng Li, Zhihao Yang, Hongfei Lin, Jian Wang, Yingyi Gui, Yin Zhang, Lei Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015

Protein complex detection in PPI networks based on data integration and supervised learning method.

Fengying Yu, Zhihao Yang, Xiaohua Hu, Yuanyuan Sun, Hongfei Lin, Jian Wang

BMC Bioinform., December, 2015

Integrating experimental and literature protein-protein interaction data for protein complex prediction.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang

BMC Genom., 2015

Predicting User Relationship from Scratch.

Xiaoxia Liu, Hongfei Lin, Zhihao Yang

Proceedings of the Social Media Processing - 4th National Conference, 2015

Predicting Best Answerers for New Questions: An Approach Leveraging Distributed Representations of Words in Community Question Answering.

Hualei Dong, Jian Wang, Hongfei Lin, Bo Xu, Zhihao Yang

Proceedings of the Ninth International Conference on Frontier of Computer Science and Technology, 2015

Deep neural network based protein-protein interaction extraction from biomedical literature.

Zhehuan Zhao, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang, Song Gao

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Discover potential adverse drug reactions using the skip-gram model.

Mingzhen Zhao, Bo Xu, Hongfei Lin, Zhihao Yang, Jian Wang

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Learning to rank for biomedical information retrieval.

Bo Xu, Hongfei Lin, Yuan Lin, Yunlong Ma, Liang Yang, Jian Wang, Zhihao Yang

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Biomedical event trigger detection by dependency-based word embedding.

Jian Wang, Jianhai Zhang, Yuan An, Hongfei Lin, Zhihao Yang, Yijia Zhang, Yuanyuan Sun

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

Predicting protein complex in protein interaction network - a supervised learning based method.

Feng Yu, Zhi-Hao Yang, Nan Tang, Hong Lin, Jian Wang, Zhiwei Yang

BMC Syst. Biol., 2014

Enhancing the accuracy of knowledge discovery: a supervised learning method.

Liangxi Cheng, Hongfei Lin, Feng Zhou, Zhihao Yang, Jian Wang

BMC Bioinform., 2014

Analysis of measured power-quality results of a PV system connected to Peng-Hu power system.

Sheng-Yen Lu, Li Wang, Shun-Chin Ke, Che-Hao Chang, Zhi-Hao Yang

Proceedings of the 2014 IEEE Industry Application Society Annual Meeting, 2014

Evaluation of measured power-quality results of a wind farm connected to Taiwan power system.

Sheng-Yen Lu, Li Wang, Shun-Chin Ke, Che-Hao Chang, Zhi-Hao Yang

Proceedings of the 2014 IEEE Industry Application Society Annual Meeting, 2014

Data integration and supervised learning based protein complex detection method.

Fengying Yu, Zhihao Yang, Xiaohua Hu, Yuanyuan Sun, Hongfei Lin, Jian Wang

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Fractal descriptor applied to the classification of HEp-2 cell patterns.

Rudan Xu, Yuanyuan Sun, Zhihao Yang, Bo Song, Xiaopeng Hu

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Deep graph search based disease related knowledge summarization from biomedical literature.

Xiaofang Wu, Zhihao Yang, Zhiheng Li, Yuanyuan Sun, Hongfei Lin, Jian Wang

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Exploring the relation between the characteristics of protein interaction networks and the performances of computational complex detection methods.

Xiaoxia Liu, Zhihao Yang, Ziwei Zhou, Yuanyuan Sun, Hongfei Lin, Jian Wang

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013

Protein Complex Prediction in Large Ontology Attributed Protein-Protein Interaction Networks.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yanpeng Li, Bo Xu

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

Exploring Useful Features for Biomedical Event Trigger Detection.

Jian Wang, Qian Xu, Hongfei Lin, Zhihao Yang, Yanpeng Li

J. Multiple Valued Log. Soft Comput., 2013

Integrating multiple biomedical resources for protein complex prediction.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Bo Xu

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Predicting protein complexes in protein interaction networks: A supervised learning based method.

Fengying Yu, Zhihao Yang, Nan Tang, Jiajin Wu, Hongfei Lin, Jian Wang

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Enhancing the accuracy of knowledge discovery: A supervised learning method.

Liangxi Cheng, Hongfei Lin, Feng Zhou, Zhihao Yang

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012

Hash Subgraph Pairwise Kernel for Protein-Protein Interaction Extraction.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yanpeng Li

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

PPIExtractor: A protein-protein interaction Extractor for biomédical literature.

Zhihao Yang, Zhehuan Zhao, Yanpeng Li, Yuncui Hu, Hongfei Lin

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

Classifying protein complexes from candidate subgraphs using fuzzy machine learning model.

Bo Xu, Hongfei Lin, Zhihao Yang, Kavishwar B. Wagholikar, Hongfang Liu

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

A syntactic rule-based method for automatic pathway information extraction from biomédical literature.

Yanhua Wang, Zhihao Yang, Hongfei Lin, Yanpeng Li

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

Combining labeled and unlabeled data for biomédical event extraction.

Jian Wang, Qian Xu, Hongfei Lin, Zhihao Yang, Yanpeng Li

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

2011

Neighborhood hash graph kernel for protein-protein interaction extraction.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Yanpeng Li

J. Biomed. Informatics, 2011

Combining multiple disambiguation methods for gene mention normalization.

Ning Xia, Hongfei Lin, Zhihao Yang, Yanpeng Li

Expert Syst. Appl., 2011

Passage retrieval based hidden knowledge discovery from biomedical literature.

Ran Chen, Hongfei Lin, Zhihao Yang

Expert Syst. Appl., 2011

Multiple kernel learning in protein-protein interaction extraction from biomedical literature.

Zhihao Yang, Nan Tang, Xiao Zhang, Hongfei Lin, Yanpeng Li, Zhiwei Yang

Artif. Intell. Medicine, 2011

Learning to rank using query-level regression.

Jiajin Wu, Zhihao Yang, Yuan Lin, Hongfei Lin, Zheng Ye, Kan Xu

Proceedings of the Proceeding of the 34th International ACM SIGIR Conference on Research and Development in Information Retrieval, 2011

Identifying Protein Complexes from PPI Networks Using GO Semantic Similarity.

Jian Wang, Dong Xie, Hongfei Lin, Zhihao Yang, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2010

BioPPISVMExtractor: A protein-protein interaction extractor for biomedical literature using SVM and rich feature sets.

Zhihao Yang, Hongfei Lin, Yanpeng Li

J. Biomed. Informatics, 2010

Learning an enriched representation from unlabeled data for protein-protein interaction extraction.

Yanpeng Li, Xiaohua Hu, Hongfei Lin, Zhihao Yang

BMC Bioinform., 2010

Asymptotic mean square stability analysis for cellular neural networks with random delays.

Zhihao Yang, Enwen Zhu, Yueheng Wang, Jinbo Liu

Proceedings of the IEEE International Conference on Networking, Sensing and Control, 2010

Ranking SVM for multiple kernels output combination in protein-protein interaction extraction from biomedical literature.

Zhihao Yang, Yuan Lin, Jiajin Wu, Nan Tang, Hongfei Lin, Yanpeng Li

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Ontology integration to identify protein complex in protein interaction networks.

Bo Xu, Hongfei Lin, Zhihao Yang

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009

BioPPIExtractor: A protein-protein interaction extraction system for biomedical literature.

Zhihao Yang, Hongfei Lin, Baodong Wu

Expert Syst. Appl., 2009

Uncertainty sampling-based active learning for protein-protein interaction extraction from biomedical literature.

Baojin Cui, Hongfei Lin, Zhihao Yang

Expert Syst. Appl., 2009

Incorporating rich background knowledge for gene named entity classification and recognition.

Yanpeng Li, Hongfei Lin, Zhihao Yang

BMC Bioinform., 2009

Applying Feature Coupling Generalization for Protein-Protein Interaction Extraction.

Yanpeng Li, Hongfei Lin, Zhihao Yang

Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

A Boosting Approach for Learning to Rank Using SVD with Partially Labeled Data.

Yuan Lin, Hongfei Lin, Zhihao Yang, Sui Su

Proceedings of the Information Retrieval Technology, 2009

2008

Exploiting the contextual cues for bio-entity name recognition in biomedical literature.

Zhihao Yang, Hongfei Lin, Yanpeng Li

J. Biomed. Informatics, 2008

Exploiting the performance of dictionary-based bio-entity name recognition in biomedical literature.

Zhihao Yang, Hongfei Lin, Yanpeng Li

Comput. Biol. Chem., 2008

DUTIR at TREC 2008 Relevance Feedback Track.

Xiaoling Sun, Yuan Lin, Hongfei Lin, Zhihao Yang

Proceedings of The Seventeenth Text REtrieval Conference, 2008

Enhancing Biomedical Named Entity Classification Using Terabyte Unlabeled Data.

Yanpeng Li, Hongfei Lin, Zhihao Yang

Proceedings of the Information Retrieval Technology, 2008

2007

DUTIR at TREC 2007 Genomics Track.

Zhihao Yang, Hongfei Lin, Baojin Cui, Yanpeng Li, Xiao Zhang

Proceedings of The Sixteenth Text REtrieval Conference, 2007

DUTIR at TREC 2007 Blog Track.

Rui Song, Qin Tang, Daming Shi, Hongfei Lin, Zhihao Yang

Proceedings of The Sixteenth Text REtrieval Conference, 2007

DUTIR at TREC 2007 Enterprise Track.

Jianmei Chen, Hui Ren, Linhong Xu, Hongfei Lin, Zhihao Yang

Proceedings of The Sixteenth Text REtrieval Conference, 2007

Incorporating Dictionary Features into Conditional Random Fields for Gene/Protein Named Entity Recognition.

Hongfei Lin, Yanpeng Li, Zhihao Yang

Proceedings of the Emerging Technologies in Knowledge Discovery and Data Mining, 2007

Two Phase Indexes Based Passage Retrieval in Biomedical Texts.

Ran Chen, Hongfei Lin, Zhihao Yang

Proceedings of the Bio-Inspired Computational Intelligence and Applications, 2007

2006

DUTIR at TREC 2006: Genomics and Enterprise Tracks.

Zhihao Yang, Hongfei Lin, Yanpeng Li, Linhong Xu, Yu Pan, Baoyan Liu

Proceedings of the Fifteenth Text REtrieval Conference, 2006

2005

TREC 2005 Genomics Track Experiments at DUTAI.

Zhihao Yang, Hongfei Lin, Yanpeng Li, Baoyan Liu, Ye Lu

Proceedings of the Fourteenth Text REtrieval Conference, 2005