Zhihao Yang

According to our database1, Zhihao Yang authored at least 128 papers between 2005 and 2020.

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Bibliography

2020
KGHC: a knowledge graph for hepatocellular carcinoma.
BMC Medical Informatics Decis. Mak., 2020

Attention guided capsule networks for chemical-protein interaction extraction.
J. Biomed. Informatics, 2020

A neural network-based joint learning approach for biomedical entity and relation extraction from biomedical literature.
J. Biomed. Informatics, 2020

Exploiting adversarial transfer learning for adverse drug reaction detection from texts.
J. Biomed. Informatics, 2020

FBSN: A hybrid fine-grained neural network for biomedical event trigger identification.
Neurocomputing, 2020

Biomedical named entity recognition using BERT in the machine reading comprehension framework.
CoRR, 2020

Incorporating representation learning and multihead attention to improve biomedical cross-sentence n-ary relation extraction.
BMC Bioinform., 2020

Biomedical document triage using a hierarchical attention-based capsule network.
BMC Bioinform., 2020

Exploiting sequence labeling framework to extract document-level relations from biomedical texts.
BMC Bioinform., 2020

Chemical-protein interaction extraction via Gaussian probability distribution and external biomedical knowledge.
Bioinform., 2020

Pricing Strategy of Multi-Energy Provider Considering Integrated Demand Response.
IEEE Access, 2020

Interactive Self-Attentive Siamese Network for Biomedical Sentence Similarity.
IEEE Access, 2020

Risk Assessment of Cyber Attacks on Power Grids Considering the Characteristics of Attack Behaviors.
IEEE Access, 2020

Power Decoupling Control Strategy of 35 kV Cascaded H-Bridge Energy Storage System.
Proceedings of the IEEE International Conference on Networking, Sensing and Control, 2020

2019
Detecting adverse drug reactions from social media based on multi-channel convolutional neural networks.
Neural Comput. Appl., 2019

Integrating shortest dependency path and sentence sequence into a deep learning framework for relation extraction in clinical text.
BMC Medical Informatics Decis. Mak., 2019

Intelligent multi-document summarization for biomedical literature by word embeddings and graph-based ranking.
J. Intell. Fuzzy Syst., 2019

Extracting drug-drug interactions with hybrid bidirectional gated recurrent unit and graph convolutional network.
J. Biomed. Informatics, 2019

Neural network-based approaches for biomedical relation classification: A review.
J. Biomed. Informatics, 2019

Chemical-protein interaction extraction from biomedical literature: a hierarchical recurrent convolutional neural network method.
Int. J. Data Min. Bioinform., 2019

KeSACNN: a protein-protein interaction article classification approach based on deep neural network.
Int. J. Data Min. Bioinform., 2019

Chemical-protein Interaction Extraction via Gaussian Probability Distribution and External Biomedical Knowledge.
CoRR, 2019

Adverse drug reaction detection via a multihop self-attention mechanism.
BMC Bioinform., 2019

A supervised term ranking model for diversity enhanced biomedical information retrieval.
BMC Bioinform., 2019

Chemical-protein interaction extraction via contextualized word representations and multihead attention.
Database J. Biol. Databases Curation, 2019

Biomedical event trigger detection with convolutional highway neural network and extreme learning machine.
Appl. Soft Comput., 2019

Detection of protein complexes from multiple protein interaction networks using graph embedding.
Artif. Intell. Medicine, 2019

A Deep Learning Approach With Deep Contextualized Word Representations for Chemical-Protein Interaction Extraction From Biomedical Literature.
IEEE Access, 2019

GrEDeL: A Knowledge Graph Embedding Based Method for Drug Discovery From Biomedical Literatures.
IEEE Access, 2019

DUTIR at TREC 2019: Precision Medicine Track.
Proceedings of the Twenty-Eighth Text REtrieval Conference, 2019

Bi-directional Capsule Network Model for Chinese Biomedical Community Question Answering.
Proceedings of the Natural Language Processing and Chinese Computing, 2019

Residual Connected Enhanced Sequential Inference Model for Natural Language Inference.
Proceedings of the 14th IEEE International Conference on Intelligent Systems and Knowledge Engineering, 2019

Transfer Learning in Biomedical Named Entity Recognition: An Evaluation of BERT in the PharmaCoNER task.
Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, 2019

Disease Gene Prediction Based on Heterogeneous Probabilistic Hypergraph Ranking.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018
Improve Biomedical Information Retrieval Using Modified Learning to Rank Methods.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Exploring Answer Information for Question Classification in Community Question Answering.
J. Multiple Valued Log. Soft Comput., 2018

A neural network approach to chemical and gene/protein entity recognition in patents.
J. Cheminformatics, 2018

An effective neural model extracting document level chemical-induced disease relations from biomedical literature.
J. Biomed. Informatics, 2018

A hybrid model based on neural networks for biomedical relation extraction.
J. Biomed. Informatics, 2018

SemaTyP: a knowledge graph based literature mining method for drug discovery.
BMC Bioinform., 2018

Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks.
BMC Bioinform., 2018

Drug-drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths.
Bioinform., 2018

An attention-based BiLSTM-CRF approach to document-level chemical named entity recognition.
Bioinform., 2018

Document triage for identifying protein-protein interactions affected by mutations: a neural network ensemble approach.
Database J. Biol. Databases Curation, 2018

WECA:A WordNet-Encoded Collocation-Attention Network for Homographic Pun Recognition.
Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, Brussels, Belgium, October 31, 2018

DUTIR at the CCKS-2018 Task1: A Neural Network Ensemble Approach for Chinese Clinical Named Entity Recognition.
Proceedings of the Evaluation Tasks at the China Conference on Knowledge Graph and Semantic Computing (CCKS 2018), 2018

Full-attention Based Drug Drug Interaction Extraction Exploiting User-generated Content.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Multipath2vec: Predicting Pathogenic Genes via Heterogeneous Network Embedding.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Protein Complexes Detection Based on Global Network Representation Learning.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Hierarchical Recurrent Convolutional Neural Network for Chemical-protein Relation Extraction from Biomedical Literature.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A Knowledge Graph based Bidirectional Recurrent Neural Network Method for Literature-based Discovery.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Protein-Protein Interaction Article Classification: A Knowledge-enriched Self-Attention Convolutional Neural Network Approach.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

PC-SENE: A node embedding based method for protein complex detection.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

HMNPPID: A Database of Protein-protein Interactions Associated with Human Malignant Neoplasms.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A multi-task learning based approach to biomedical entity relation extraction.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Improve Diversity-oriented Biomedical Information Retrieval using Supervised Query Expansion.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017
A multiple distributed representation method based on neural network for biomedical event extraction.
BMC Medical Informatics Decis. Mak., 2017

A parallel C4.5 decision tree algorithm based on MapReduce.
Concurr. Comput. Pract. Exp., 2017

DIGNiFI: Discovering causative genes for orphan diseases using protein-protein interaction networks.
BMC Syst. Biol., 2017

An attention-based effective neural model for drug-drug interactions extraction.
BMC Bioinform., 2017

Detecting Potential Adverse Drug Reactions Using Association Rules and Embedding Models.
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

A hybrid protein-protein interaction triple extraction method for biomedical literature.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016
A graph kernel based on context vectors for extracting drug-drug interactions.
J. Biomed. Informatics, 2016

A protein-protein interaction extraction approach based on deep neural network.
Int. J. Data Min. Bioinform., 2016

Biomedical event trigger detection based on convolutional neural network.
Int. J. Data Min. Bioinform., 2016

A method for predicting protein complex in dynamic PPI networks.
BMC Bioinform., 2016

Construction of dynamic probabilistic protein interaction networks for protein complex identification.
BMC Bioinform., 2016

Drug drug interaction extraction from biomedical literature using syntax convolutional neural network.
Bioinform., 2016

Generating User-oriented Text Summarization Based on Social Networks Using Topic Models.
Proceedings of the Social Media Processing - 5th National Conference, 2016

Detecting Potential Adverse Drug Reactions from Health-Related Social Networks.
Proceedings of the Natural Language Understanding and Intelligent Applications, 2016

Stability analysis of a hybrid multi-infeed HVDC system connected between two offshore wind farms and two power grids.
Proceedings of the 2016 IEEE Industry Applications Society Annual Meeting, 2016

DUTIR in BioNLP-ST 2016: Utilizing Convolutional Network and Distributed Representation to Extract Complicate Relations.
Proceedings of the 4th BioNLP Shared Task Workshop, BioNLP 2016, 2016

Disease-specific protein complex detection in the human protein interaction network with a supervised learning method.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

ML-CNN: A novel deep learning based disease named entity recognition architecture.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Biomedical event extraction based on distributed representation and deep learning.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

CIDExtractor: A chemical-induced disease relation extraction system for biomedical literature.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015
Integrating experimental and literature protein-protein interaction data for protein complex prediction.
BMC Genom., 2015

Predicting User Relationship from Scratch.
Proceedings of the Social Media Processing - 4th National Conference, 2015

Predicting Best Answerers for New Questions: An Approach Leveraging Distributed Representations of Words in Community Question Answering.
Proceedings of the Ninth International Conference on Frontier of Computer Science and Technology, 2015

Deep neural network based protein-protein interaction extraction from biomedical literature.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Discover potential adverse drug reactions using the skip-gram model.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Learning to rank for biomedical information retrieval.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Biomedical event trigger detection by dependency-based word embedding.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
Predicting protein complex in protein interaction network - a supervised learning based method.
BMC Syst. Biol., 2014

Enhancing the accuracy of knowledge discovery: a supervised learning method.
BMC Bioinform., 2014

Analysis of measured power-quality results of a PV system connected to Peng-Hu power system.
Proceedings of the 2014 IEEE Industry Application Society Annual Meeting, 2014

Evaluation of measured power-quality results of a wind farm connected to Taiwan power system.
Proceedings of the 2014 IEEE Industry Application Society Annual Meeting, 2014

Data integration and supervised learning based protein complex detection method.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Fractal descriptor applied to the classification of HEp-2 cell patterns.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Deep graph search based disease related knowledge summarization from biomedical literature.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Exploring the relation between the characteristics of protein interaction networks and the performances of computational complex detection methods.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013
Protein Complex Prediction in Large Ontology Attributed Protein-Protein Interaction Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013

Exploring Useful Features for Biomedical Event Trigger Detection.
J. Multiple Valued Log. Soft Comput., 2013

Integrating multiple biomedical resources for protein complex prediction.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Predicting protein complexes in protein interaction networks: A supervised learning based method.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Enhancing the accuracy of knowledge discovery: A supervised learning method.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
Hash Subgraph Pairwise Kernel for Protein-Protein Interaction Extraction.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012

PPIExtractor: A protein-protein interaction Extractor for biomédical literature.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

Classifying protein complexes from candidate subgraphs using fuzzy machine learning model.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

A syntactic rule-based method for automatic pathway information extraction from biomédical literature.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

Combining labeled and unlabeled data for biomédical event extraction.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

2011
Neighborhood hash graph kernel for protein-protein interaction extraction.
J. Biomed. Informatics, 2011

Combining multiple disambiguation methods for gene mention normalization.
Expert Syst. Appl., 2011

Passage retrieval based hidden knowledge discovery from biomedical literature.
Expert Syst. Appl., 2011

Multiple kernel learning in protein-protein interaction extraction from biomedical literature.
Artif. Intell. Medicine, 2011

Learning to rank using query-level regression.
Proceedings of the Proceeding of the 34th International ACM SIGIR Conference on Research and Development in Information Retrieval, 2011

Identifying Protein Complexes from PPI Networks Using GO Semantic Similarity.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2010
BioPPISVMExtractor: A protein-protein interaction extractor for biomedical literature using SVM and rich feature sets.
J. Biomed. Informatics, 2010

Learning an enriched representation from unlabeled data for protein-protein interaction extraction.
BMC Bioinform., 2010

Asymptotic mean square stability analysis for cellular neural networks with random delays.
Proceedings of the IEEE International Conference on Networking, Sensing and Control, 2010

Ranking SVM for multiple kernels output combination in protein-protein interaction extraction from biomedical literature.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Ontology integration to identify protein complex in protein interaction networks.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009
BioPPIExtractor: A protein-protein interaction extraction system for biomedical literature.
Expert Syst. Appl., 2009

Uncertainty sampling-based active learning for protein-protein interaction extraction from biomedical literature.
Expert Syst. Appl., 2009

Incorporating rich background knowledge for gene named entity classification and recognition.
BMC Bioinform., 2009

Applying Feature Coupling Generalization for Protein-Protein Interaction Extraction.
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

A Boosting Approach for Learning to Rank Using SVD with Partially Labeled Data.
Proceedings of the Information Retrieval Technology, 2009

2008
Exploiting the contextual cues for bio-entity name recognition in biomedical literature.
J. Biomed. Informatics, 2008

Exploiting the performance of dictionary-based bio-entity name recognition in biomedical literature.
Comput. Biol. Chem., 2008

DUTIR at TREC 2008 Relevance Feedback Track.
Proceedings of The Seventeenth Text REtrieval Conference, 2008

Enhancing Biomedical Named Entity Classification Using Terabyte Unlabeled Data.
Proceedings of the Information Retrieval Technology, 2008

2007
DUTIR at TREC 2007 Genomics Track.
Proceedings of The Sixteenth Text REtrieval Conference, 2007

DUTIR at TREC 2007 Blog Track.
Proceedings of The Sixteenth Text REtrieval Conference, 2007

DUTIR at TREC 2007 Enterprise Track.
Proceedings of The Sixteenth Text REtrieval Conference, 2007

Incorporating Dictionary Features into Conditional Random Fields for Gene/Protein Named Entity Recognition.
Proceedings of the Emerging Technologies in Knowledge Discovery and Data Mining, 2007

Two Phase Indexes Based Passage Retrieval in Biomedical Texts.
Proceedings of the Bio-Inspired Computational Intelligence and Applications, 2007

2006
DUTIR at TREC 2006: Genomics and Enterprise Tracks.
Proceedings of the Fifteenth Text REtrieval Conference, 2006

2005
TREC 2005 Genomics Track Experiments at DUTAI.
Proceedings of the Fourteenth Text REtrieval Conference, 2005


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