Tapio Salakoski
Affiliations:- University of Turku, Finland
According to our database1,
Tapio Salakoski
authored at least 167 papers
between 1993 and 2023.
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Bibliography
2023
2022
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022
2021
Universal Lemmatizer: A sequence-to-sequence model for lemmatizing Universal Dependencies treebanks.
Nat. Lang. Eng., 2021
Predictive Models as Early Warning Systems: A Bayesian Classification Model to Identify At-Risk Students of Programming.
Proceedings of the Intelligent Computing, 2021
Text Classification Model Explainability for Keyword Extraction - Towards Keyword-Based Summarization of Nursing Care Episodes.
Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021
2020
Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods.
J. Am. Medical Informatics Assoc., 2020
Long Term Effects on Technology Enhanced Learning: The Use of Weekly Digital Lessons in Mathematics.
Informatics Educ., 2020
Assisting nurses in care documentation: from automated sentence classification to coherent document structures with subject headings.
J. Biomed. Semant., 2020
Using early assessment performance as early warning signs to identify at-risk students in programming courses.
Proceedings of the IEEE Frontiers in Education Conference, 2020
Propagating AI Knowledge Across University Disciplines- The Design of A Multidisciplinary AI Study Module.
Proceedings of the IEEE Frontiers in Education Conference, 2020
Proceedings of the 28th European Symposium on Artificial Neural Networks, 2020
2019
CoRR, 2019
An Unsupervised Query Rewriting Approach Using N-gram Co-occurrence Statistics to Find Similar Phrases in Large Text Corpora.
Proceedings of the 22nd Nordic Conference on Computational Linguistics, NoDaLiDa 2019, Turku, Finland, September 30, 2019
Proceedings of the 22nd Nordic Conference on Computational Linguistics, NoDaLiDa 2019, Turku, Finland, September 30, 2019
Unsupervised Phrase-Level Query Rewriting for Assisting Search in Clinical Free Text.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019
2018
Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction.
Database J. Biol. Databases Curation, 2018
Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling.
Database J. Biol. Databases Curation, 2018
Improving Layman Readability of Clinical Narratives with Unsupervised Synonym Replacement.
Proceedings of the Building Continents of Knowledge in Oceans of Data: The Future of Co-Created eHealth, 2018
Proceedings of the CoNLL 2018 Shared Task: Multilingual Parsing from Raw Text to Universal Dependencies, Brussels, Belgium, October 31, 2018
Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing.
Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018, 2018
Evaluation of a Prototype System that Automatically Assigns Subject Headings to Nursing Narratives Using Recurrent Neural Network.
Proceedings of the Ninth International Workshop on Health Text Mining and Information Analysis, 2018
2017
A System for Identifying and Exploring Text Repetition in Large Historical Document Corpora.
Proceedings of the 21st Nordic Conference on Computational Linguistics, 2017
Proceedings of the 21st Nordic Conference on Computational Linguistics, 2017
Applying BLAST to Text Reuse Detection in Finnish Newspapers and Journals, 1771-1910.
Proceedings of the NoDaLiDa 2017 Workshop on Processing Historical Language, 2017
Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017
Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017
Ensemble of Convolutional Neural Networks for Medicine Intake Recognition in Twitter.
Proceedings of the 2nd Social Media Mining for Health Research and Applications Workshop co-located with the American Medical Informatics Association Annual Symposium (AMIA 2017), 2017
2016
Artif. Intell. Medicine, 2016
Factors Affecting the Availability of Electronic Patient Records for Secondary Purposes - A Case Study.
Proceedings of the Building Sustainable Health Ecosystems, 2016
Proceedings of the 10th International Workshop on Semantic Evaluation, 2016
Proceedings of the International Workshop on Big Data and Information Security, 2016
Proceedings of the 2016 ACM Conference on Innovation and Technology in Computer Science Education, 2016
Deep Learning with Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016.
Proceedings of the 4th BioNLP Shared Task Workshop, BioNLP 2016, 2016
Syntactic analyses and named entity recognition for PubMed and PubMed Central - up-to-the-minute.
Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 2016
Proceedings of the Australasian Computer Science Week Multiconference, 2016
2015
Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis.
BMC Bioinform., December, 2015
BMC Bioinform., December, 2015
Smart Dosing: A mobile application for tracking the medication tray-filling and dispensation processes in hospital wards.
Proceedings of the Recent Advances in Ambient Assisted Living, 2015
Care episode retrieval: distributional semantic models for information retrieval in the clinical domain.
BMC Medical Informatics Decis. Mak., 2015
Towards the Classification of the Finnish Internet Parsebank: Detecting Translations and Informality.
Proceedings of the 20th Nordic Conference of Computational Linguistics, 2015
Interactive Learning Content for Introductory Computer Science Course Using the ViLLE Exercise Framework.
Proceedings of the 2015 International Conference on Learning and Teaching in Computing and Engineering, 2015
Proceedings of the Current Approaches in Applied Artificial Intelligence, 2015
Comparing student performance between traditional and technologically enhanced programming course.
Proceedings of the 17th Australasian Computing Education Conference, 2015
2014
Lang. Resour. Evaluation, 2014
J. Biomed. Informatics, 2014
Documentation of the Clinical Phase of the Cardiac Rehabilitation Process in a Finnish University Hospital District.
Proceedings of the Safe and Secure Cities, 2014
Proceedings of the Structural, Syntactic, and Statistical Pattern Recognition, 2014
Proceedings of the 2nd European Workshop on Practical Aspects of Health Informatics, 2014
Proceedings of the 14th Koli Calling International Conference on Computing Education Research, 2014
Can IT health-care applications improve the medication tray-filling process at hospital wards? An exploratory study using eye-tracking and stress response.
Proceedings of the 16th IEEE International Conference on e-Health Networking, 2014
Proceedings of the 5th International Workshop on Health Text Mining and Information Analysis, 2014
2013
Using cluster analysis to identify weak signals of lethal trends in aviation and healthcare documentation.
Int. J. Netw. Virtual Organisations, 2013
UTurku: Drug Named Entity Recognition and Drug-Drug Interaction Extraction Using SVM Classification and Domain Knowledge.
Proceedings of the 7th International Workshop on Semantic Evaluation, 2013
Proceedings of the 19th Nordic Conference of Computational Linguistics, 2013
Proceedings of the 19th Nordic Conference of Computational Linguistics, 2013
Proceedings of the Second International Conference on Dependency Linguistics, 2013
Using Text Mining to Explore Factors Associated with Acute Confusion in Cardiac Patients Documentation.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013
EVEX in ST'13: Application of a large-scale text mining resource to event extraction and network construction.
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013
2012
IEEE Trans. Fuzzy Syst., 2012
Int. J. Embed. Real Time Commun. Syst., 2012
BMC Bioinform., 2012
Wrapper-based selection of genetic features in genome-wide association studies through fast matrix operations.
Algorithms Mol. Biol., 2012
Exploring Biomolecular Literature with EVEX: Connecting Genes through Events, Homology, and Indirect Associations.
Adv. Bioinformatics, 2012
Proceedings of the Exploring the Abyss of Inequalities, 2012
Proceedings of the Applied Parallel and Scientific Computing, 2012
Proceedings of the 12th Koli Calling International Conference on Computing Education Research, 2012
Proceedings of the 12th Koli Calling International Conference on Computing Education Research, 2012
Breaking the Programming Language Barrier: Using Program Visualizations to Transfer Programming Knowledge in One Programming Language to Another.
Proceedings of the 12th IEEE International Conference on Advanced Learning Technologies, 2012
Proceedings of the 14th IEEE International Conference on High Performance Computing and Communication & 9th IEEE International Conference on Embedded Software and Systems, 2012
Proceedings of the CLEF 2012 Evaluation Labs and Workshop, 2012
Proceedings of the CLEF 2012 Evaluation Labs and Workshop, 2012
PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations.
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012
2011
Pattern Recognit. Lett., 2011
On Learning and Cross-Validation with Decomposed Nyström Approximation of Kernel Matrix.
Neural Process. Lett., 2011
An experimental comparison of cross-validation techniques for estimating the area under the ROC curve.
Comput. Stat. Data Anal., 2011
Extracting Contextualized Complex Biological Events with Rich Graph-Based Feature Sets.
Comput. Intell., 2011
BMC Bioinform., 2011
Proceedings of the Eleventh Scandinavian Conference on Artificial Intelligence, 2011
A Parallel Online Regularized Least-squares Machine Learning Algorithm for Future Multi-core Processors.
Proceedings of the PECCS 2011, 2011
Proceedings of the Data Mining Workshops (ICDMW), 2011
Proceedings of the Artificial Neural Networks and Machine Learning - ICANN 2011, 2011
Fast and parallelized greedy forward selection of genetic variants in Genome-wide association studies.
Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011
Proceedings of the 2011 Frontiers in Education Conference, 2011
Proceedings of the Computational Dependency Theory [papers from the International Conference on Dependency Linguistics, 2011
EVEX: A PubMed-Scale Resource for Homology-Based Generalization of Text Mining Predictions.
Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, 2011
Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011
2010
Proceedings of the third International Workshop on Machine Learning in Systems Biology, 2010
Eur. J. Oper. Res., 2010
Proceedings of the 2010 ACM Symposium on Applied Computing (SAC), 2010
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2010
Proceedings of the 10th Koli Calling International Conference on Computing Education Research, 2010
Proceedings of the Ninth International Conference on Machine Learning and Applications, 2010
Applying Permutation Tests for Assessing the Statistical Significance of Wrapper Based Feature Selection.
Proceedings of the Ninth International Conference on Machine Learning and Applications, 2010
Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain.
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010
Proceedings of the Fourth Linguistic Annotation Workshop, 2010
Proceedings of the Preference Learning., 2010
2009
Matrix representations, linear transformations, and kernels for disambiguation in natural language.
Mach. Learn., 2009
Towards automated processing of clinical Finnish: Sublanguage analysis and a rule-based parser.
Int. J. Medical Informatics, 2009
Combining hidden Markov models and latent semantic analysis for topic segmentation and labeling: Method and clinical application.
Int. J. Medical Informatics, 2009
Informatics Educ., 2009
Appl. Intell., 2009
Parsing Clinical Finnish: Experiments with Rule-Based and Statistical Dependency Parsers.
Proceedings of the 17th Nordic Conference of Computational Linguistics, 2009
Proceedings of the 17th Nordic Conference of Computational Linguistics, 2009
Proceedings of the Connecting Health and Humans - Proceedings of NI2009, The 10th International Congress on Nursing Informatics, 28 June, 2009
Proceedings of the Adaptive and Natural Computing Algorithms, 9th International Conference, 2009
Integrated Data Management and Analysis Environment for Medical Longitudinal Research with Machine Learning Based Prediction Models.
Proceedings of the CSIE 2009, 2009 WRI World Congress on Computer Science and Information Engineering, March 31, 2009
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009
2008
Proceedings of the Advances of Computational Intelligence in Industrial Systems, 2008
J. Inf. Technol. Educ. Innov. Pract., 2008
BMC Bioinform., 2008
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning.
BMC Bioinform., 2008
Detecting biological associations between genes based on the theory of phase synchronization.
Biosyst., 2008
Proceedings of the Tenth Scandinavian Conference on Artificial Intelligence, 2008
Proceedings of the Tenth Scandinavian Conference on Artificial Intelligence, 2008
Proceedings of the 8th International Conference on Computing Education Research, 2008
Proceedings of the INTERSPEECH 2008, 2008
Proceedings of the INTERSPEECH 2008, 2008
Proceedings of the INTERSPEECH 2008, 2008
Proceedings of the 8th IEEE International Conference on Advanced Learning Technologies, 2008
Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, 2008
2007
Applying language technology to nursing documents: Pros and cons with a focus on ethics.
Int. J. Medical Informatics, 2007
Int. J. Medical Informatics, 2007
BMC Bioinform., 2007
Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007
Proceedings of the 16th Nordic Conference of Computational Linguistics, 2007
Proceedings of the 16th Nordic Conference of Computational Linguistics, 2007
Proceedings of the Database and Expert Systems Applications, 18th International Conference, 2007
On the unification of syntactic annotations under the Stanford dependency scheme: A case study on BioInfer and GENIA.
Proceedings of the Biological, translational, and clinical language processing, 2007
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007
2006
Evaluation of two dependency parsers on biomedical corpus targeted at protein-protein interactions.
Int. J. Medical Informatics, 2006
Comput. Sci. Educ., 2006
Lexical adaptation of link grammar to the biomedical sublanguage: a comparative evaluation of three approaches.
BMC Bioinform., 2006
Proceedings of the Knowledge-Based Intelligent Information and Engineering Systems, 2006
Proceedings of the Advances in Applied Artificial Intelligence, 2006
Proceedings of the Advances in Natural Language Processing, 2006
Segmental Duration in Utterance-Initial Environment: Evidence from Finnish Speech Corpora.
Proceedings of the Advances in Natural Language Processing, 2006
Incorporating External Information in Bayesian Classifiers Via Linear Feature Transformations.
Proceedings of the Advances in Natural Language Processing, 2006
The Vowel Game: Continuous Real-Time Visualization for Pronunciation Learning with Vowel Charts.
Proceedings of the Advances in Natural Language Processing, 2006
Proceedings of the Advances in Natural Language Processing, 2006
2005
Multi-Perspective Study of Novice Learners Adopting the Visual Algorithm Simulation Exercise System TRAKLA2.
Informatics Educ., 2005
SIGSAM Bull., 2005
Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation.
BMC Bioinform., 2005
Proceedings of the Advances in Intelligent Data Analysis VI, 2005
The Feasibility of Automatic Assessment and Feedback.
Proceedings of the Cognition and Exploratory Learning in Digital Age, 2005
Kernels Incorporating Word Positional Information in Natural Language Disambiguation Tasks.
Proceedings of the Eighteenth International Florida Artificial Intelligence Research Society Conference, 2005
Proceedings of the 16th International Workshop on Database and Expert Systems Applications (DEXA 2005), 2005
2004
New Techniques for Disambiguation in Natural Language and Their Application to Biological Text.
J. Mach. Learn. Res., 2004
Proceedings of the Advances in Natural Language Processing, 4th International Conference, 2004
Extracting Protein-Protein Interaction Sentences by Applying Rough Set Data Analysis.
Proceedings of the Rough Sets and Current Trends in Computing, 2004
Analysis of Link Grammar on Biomedical Dependency Corpus Targeted at Protein-Protein Interactions.
Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications, 2004
2002
IEEE Trans. Biomed. Eng., 2002
2001
1997
Representative noise-free complete-link classification with application to protein structures.
Pattern Recognit., 1997
1993
General formulation and evaluation of agglomerative clustering methods with metric and non-metric distances.
Pattern Recognit., 1993