# Theodore W. Berger

According to our database

Collaborative distances:

^{1}, Theodore W. Berger authored at least 154 papers between 1994 and 2020.Collaborative distances:

## Awards

## IEEE Fellow

IEEE Fellow 2010, "For contributions to nonlinear systems modeling of neural tissue and development of neural prostheses".

## Timeline

#### Legend:

Book In proceedings Article PhD thesis Other## Links

#### On csauthors.net:

## Bibliography

2020

Topographic Organization of Correlation Along the Longitudinal and Transverse Axes in Rat Hippocampal CA3 Due to Excitatory Afferents.

Frontiers Comput. Neurosci., 2020

A Computational Model of the Cholinergic Modulation of CA1 Pyramidal Cell Activity.

Frontiers Comput. Neurosci., 2020

Generation of Granule Cell Dendritic Morphologies by Estimating the Spatial Heterogeneity of Dendritic Branching.

Frontiers Comput. Neurosci., 2020

Admittance Method for Estimating Local Field Potentials Generated in a Multi-Scale Neuron Model of the Hippocampus.

Frontiers Comput. Neurosci., 2020

ROOTS: An Algorithm to Generate Biologically Realistic Cortical Axons and an Application to Electroceutical Modeling.

Frontiers Comput. Neurosci., 2020

Proceedings of the 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2020

Accelerating Estimation of a Multi-Input Multi-Output Model of the Hippocampus with a Parallel Computing Strategy.

Proceedings of the 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2020

Validation of a Convolutional Neural Network Model for Spike Transformation Using a Generalized Linear Model.

2019

Axonal Anatomy Optimizes Spatial Encoding in the Rat Entorhinal-Dentate System: A Computational Study.

IEEE Trans. Biomed. Eng., 2019

Multi-Input, Multi-Output Neuronal Mode Network Approach to Modeling the Encoding Dynamics and Functional Connectivity of Neural Systems.

Neural Comput., 2019

Network Activity Due to Topographic Organization of Schaffer Collaterals in a Large-Scale Model of Rat CA1.

Proceedings of the 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2019

Pathogenic Processes Underlying Alzheimer's Disease: Modeling the Effects of Amyloid Beta on Synaptic Transmission.

Proceedings of the 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2019

2018

Model-Based Analysis of Electrode Placement and Pulse Amplitude for Hippocampal Stimulation.

IEEE Trans. Biomed. Eng., 2018

Designing Patient-Specific Optimal Neurostimulation Patterns for Seizure Suppression.

Neural Comput., 2018

Neural Comput., 2018

Mechanism-Based and Input-Output Modeling of the Key Neuronal Connections and Signal Transformations in the CA3-CA1 Regions of the Hippocampus.

Neural Comput., 2018

A Glutamatergic Spine Model to Enable Multi-Scale Modeling of Nonlinear Calcium Dynamics.

Frontiers Comput. Neurosci., 2018

Application of Parylene-Based Flexible Multi-Electrode Array for Recording From Subcortical Brain Regions From Behaving Rats.

Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018

Cholinergic Modulation of CA1 Pyramidal Cells via M1 Muscarinic Receptor Activation: A Computational Study at Physiological and Supraphysiological Levels.

Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018

Modeling Nonlinear Synaptic Dynamics: A Laguerre-Volterra Network Framework for Improved Computational Efficiency in Large Scale Simulations.

Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018

A Closed-Loop Multi-Channel Asynchronous Neurostimulator to Mimic Neural Code for Cognitive Prosthesis.

Point Process Filtering Estimates of Branching Rate for Neural Dendritic Morphology Generation.

Graph-Based Models of Cortical Axons for the Prediction of Neuronal Response to Extracellular Electrical Stimulation.

2017

Proceedings of the IEEE International Symposium on Circuits and Systems, 2017

Chronic multi-region recording from the rat hippocampus in vivo with a flexible Parylene-based multi-electrode array.

Proceedings of the 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2017

Multi-resolution multi-trial sparse classification model for decoding visual memories from hippocampal spikes in human.

Proceedings of the 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2017

2016

A Million-Plus Neuron Model of the Hippocampal Dentate Gyrus: Critical Role for Topography in Determining Spatiotemporal Network Dynamics.

IEEE Trans. Biomed. Eng., 2016

Identification of Stable Spike-Timing-Dependent Plasticity from Spiking Activity with Generalized Multilinear Modeling.

Neural Comput., 2016

An FPGA-Based High-Performance Neural Ensemble Spiking Activity Simulator Utilizing Generalized Volterra Kernel and Complexity Analysis.

J. Circuits Syst. Comput., 2016

Proceedings of the IEEE 7th Latin American Symposium on Circuits & Systems, 2016

Place field detection using grid-based clustering in a large-scale computational model of the rat dentate gyrus.

Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016

A sparse Laguerre-Volterra autoregressive model for seizure prediction in temporal lobe epilepsy.

Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016

A flexible parylene probe for in vivo recordings from multiple subregions of the rat hippocampus.

Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016

Decoding memory features from hippocampal spiking activities using sparse classification models.

Monte Carlo validation of spike-timing-dependent plasticity identification from spiking activity.

Development of a detailed model of calcium dynamics at the postsynaptic spine of an excitatory synapse.

A bi-directional communication paradigm between parallel NEURON and an external non-neuron process.

A large-scale detailed neuronal model of electrical stimulation of the dentate gyrus and perforant path as a platform for electrode design and optimization.

2015

An Application Specific Instruction Set Processor (ASIP) for Adaptive Filters in Neural Prosthetics.

IEEE ACM Trans. Comput. Biol. Bioinform., 2015

Nonlinear Cognitive Signal Processing in Ultralow-Power Programmable Analog Hardware.

IEEE Trans. Circuits Syst. II Express Briefs, 2015

Model-based asessment of an in-vivo predictive relationship from CA1 to CA3 in the rodent hippocampus.

J. Comput. Neurosci., 2015

Volterra representation enables modeling of complex synaptic nonlinear dynamics in large-scale simulations.

Frontiers Comput. Neurosci., 2015

Nonlinear dynamical modeling of human hippocampal CA3-CA1 functional connectivity for memory prostheses.

Proceedings of the 7th International IEEE/EMBS Conference on Neural Engineering, 2015

Maximizing predictability of a bottom-up complex multi-scale model through systematic validation and multi-objective multi-level optimization.

Proceedings of the 7th International IEEE/EMBS Conference on Neural Engineering, 2015

Topography-dependent spatio-temporal correlations in the entorhinal-dentate-CA3 circuit in a large-scale computational model of the Rat Hippocampus.

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

Design of a flexible parylene-based multi-electrode array for multi-region recording from the rat hippocampus.

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

Sparse generalized volterra model of human hippocampal spike train transformation for memory prostheses.

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

Estimation of a large-scale generalized Volterra model for neural ensembles with group lasso and local coordinate descent.

The volterra functional series is a viable alternative to kinetic models for synaptic modeling -calibration and benchmarking.

A million-plus neuron model of the hippocampal dentate gyrus: Dependency of spatio-temporal network dynamics on topography.

A 3-D admittance-level computational model of a rat hippocampus for improving prosthetic design.

2014

Proceedings of the Encyclopedia of Computational Neuroscience, 2014

Proceedings of the Encyclopedia of Computational Neuroscience, 2014

Neural Networks, 2014

An FPGA based scalable architecture of a stochastic state point process filter (SSPPF) to track the nonlinear dynamics underlying neural spiking.

Microelectron. J., 2014

On parsing the neural code in the prefrontal cortex of primates using principal dynamic modes.

J. Comput. Neurosci., 2014

VLSI architecture of a high-performance neural spiking activity simulator based on generalized Volterra kernel.

Proceedings of the 2014 International Symposium on Integrated Circuits (ISIC), 2014

Large scale parameter estimation for nonlinear dynamic systems: Application on spike-in, spike-out neural models.

Proceedings of the 2014 International Joint Conference on Neural Networks, 2014

Implementation of the excitatory entorhinal-dentate-CA3 topography in a large-scale computational model of the rat hippocampus.

Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014

Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014

Recording place cells from multiple sub-regions of the rat hippocampus with a customized micro-electrode array.

Implementing spiking neuron model and spike-timing-dependent plasticity with generalized Laguerre-Volterra models.

Generalized volterra kernel model identification of spike-timing-dependent plasticity from simulated spiking activity.

Laguerre-volterra model and architecture for MIMO system identification and output prediction.

A comparison between direct and indirect measurements of neurotransmitter vesicle release dynamics: A computational study.

A testbed to explore the optimal electrical stimulation parameters for suppressing inter-ictal spikes in human hippocampal slices.

2013

IEEE Trans. Biomed. Circuits Syst., 2013

Identification of sparse neural functional connectivity using penalized likelihood estimation and basis functions.

J. Comput. Neurosci., 2013

Nonlinear modeling of dynamic interactions within neuronal ensembles using Principal Dynamic Modes.

J. Comput. Neurosci., 2013

Proceedings of the 2013 IEEE International Symposium on Circuits and Systems (ISCAS2013), 2013

The role of topography in the transformation of spatiotemporal patterns by a large-scale, biologically realistic model of the rat dentate gyrus.

Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

Laguerre-volterra identification of spike-timing-dependent plasticity from spiking activity: A simulation study.

Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

The contribution of relative activation levels between populations of cells to network activity in a large-scale biologically realistic model of the hippocampus.

Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

Conformal ceramic electrodes that record glutamate release and corresponding neural activity in primate prefrontal cortex.

A programmable analog subthreshold biomimetic model for bi-directional communication with the brain.

Insights on synaptic paired-pulse response using parametric and non-parametric models.

Influence of ionotropic receptors localization on glutamatergic synaptic response to paired-pulse stimulation protocol.

2012

Nonlinear Dynamic Modeling of Neuron Action Potential Threshold During Synaptically Driven Broadband Intracellular Activity.

IEEE Trans. Biomed. Eng., 2012

J. Cogn. Neurosci., 2012

A Computational Model to Investigate Astrocytic Glutamate Uptake Influence on Synaptic Transmission and Neuronal Spiking.

Frontiers Comput. Neurosci., 2012

Implementation of topographically constrained connectivity for a large-scale biologically realistic model of the hippocampus.

Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2012

Functional connectivity between Layer 2/3 and Layer 5 neurons in prefrontal cortex of nonhuman primates during a delayed match-to-sample task.

Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2012

Implementation of activity-dependent synaptic plasticity rules for a large-scale biologically realistic model of the hippocampus.

Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2012

An analysis of the expression locus of long-term potentiation in hippocampal CA1 neurons.

Spatio-temporal inter-ictal activity recorded from human epileptic hippocampal slices.

Analog low-power hardware implementation of a Laguerre-Volterra model of intracellular subthreshold neuronal activity.

Modeling of the nervous system: From modulation of glutamatergic and gabaergic molecular dynamics to neuron spiking activity.

Influence of ionotropic receptor location on their dynamics at glutamatergic synapses.

2011

Nonlinear Dynamic Modeling of Synaptically Driven Single Hippocampal Neuron Intracellular Activity.

IEEE Trans. Biomed. Eng., 2011

Integrated Multiscale Modeling of the Nervous System: Predicting Changes in Hippocampal Network Activity by a Positive AMPA Receptor Modulator.

IEEE Trans. Biomed. Eng., 2011

High-Performance and Scalable System Architecture for the Real-Time Estimation of Generalized Laguerre-Volterra MIMO Model From Neural Population Spiking Activity.

IEEE J. Emerg. Sel. Topics Circuits Syst., 2011

Proceedings of the 2011 International Joint Conference on Neural Networks, 2011

Discrete Synapse Recurrent Neural Network with time-varying delays for nonlinear system modeling and its application on seismic signal classification.

Proceedings of the 2011 International Joint Conference on Neural Networks, 2011

FPGA Architecture of Generalized Laguerre-Volterra MIMO Model for Neural Population Activities.

Proceedings of the International Conference on Field Programmable Logic and Applications, 2011

FPGA Architecture of Generalized Laguerre-Volterra MIMO Model for Neural Population Spiking Activities.

Proceedings of the IEEE 19th Annual International Symposium on Field-Programmable Custom Computing Machines, 2011

Estimation and statistical validation of event-invariant nonlinear dynamic models of hippocampal CA3-CA1 population activities.

Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

Dynamic nonlinear modeling of interactions between neuronal ensembles using principal dynamic modes.

Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

A two-stage cascade nonlinear dynamical model of single neurons for the separation and quantification of pre- and post-synaptic mechanisms of synaptic transmission.

Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

A hardware-based computational platform for Generalized Laguerre-Volterra MIMO model for neural activities.

Modeling neuron-glia interactions: From parametric model to neuromorphic hardware.

Tracking the changes of hippocampal population nonlinear dynamics in rats learning a memory-dependent task.

Modeling of the nervous system: From molecular dynamics and synaptic modulation to neuron spiking activity.

2010

The Neurobiological Basis of Cognition: Identification by Multi-Input, Multioutput Nonlinear Dynamic Modeling.

Proc. IEEE, 2010

Neural Networks, 2010

Comput. Intell. Neurosci., 2010

Discrete Synapse Recurrent Neural Network for nonlinear system modeling and its application on seismic signal classification.

Proceedings of the International Joint Conference on Neural Networks, 2010

Proceedings of the International Joint Conference on Neural Networks, 2010

The Application of Non-Homogenous HMM on the Detection of Security Fence Breaches.

Proceedings of the IEEE International Conference on Acoustics, 2010

Proceedings of the IEEE International Conference on Acoustics, 2010

2009

Neural Networks, 2009

Parametric and non-parametric modeling of short-term synaptic plasticity. Part II: Experimental study.

J. Comput. Neurosci., 2009

Parametric and non-parametric modeling of short-term synaptic plasticity. Part I: computational study.

J. Comput. Neurosci., 2009

Cadence analysis of temporal gait patterns for seismic discrimination between human and quadruped footsteps.

Proceedings of the IEEE International Conference on Acoustics, 2009

Multi-Input, Multi-Output Nonlinear Dynamic Modeling to Identify Biologically-Based Transformations as the "Cognitive Processes" Represented by the Ensemble Coding of Neuron Populations.

Proceedings of the Biologically Inspired Cognitive Architectures, 2009

2008

Modeling the Nonlinear Properties of the <i>in vitro</i> Hippocampal Perforant Path-Dentate System Using Multielectrode Array Technology.

IEEE Trans. Biomed. Eng., 2008

Proceedings of the 13th International Conference on Intelligent User Interfaces, 2008

Proceedings of the International Joint Conference on Neural Networks, 2008

2007

Neuronal Network Morphology and Electrophysiologyof Hippocampal Neurons Cultured on Surface-Treated Multielectrode Arrays.

IEEE Trans. Biomed. Eng., 2007

Nonlinear Dynamic Modeling of Spike Train Transformations for Hippocampal-Cortical Prostheses.

IEEE Trans. Biomed. Eng., 2007

Asymmetric Synaptic Plasticity Based on Arbitrary Pre- and Postsynaptic Timing Spikes Using Finite State Model.

Proceedings of the International Joint Conference on Neural Networks, 2007

The Application of Dynamic Synapse Neural Networks on Footstep and Vehicle Recognition.

Proceedings of the International Joint Conference on Neural Networks, 2007

2006

Proceedings of the International Joint Conference on Neural Networks, 2006

Hardware Implementation of Dynamic Synapse Neural Networks for Acoustic Sound Recognition.

Proceedings of the International Joint Conference on Neural Networks, 2006

A multi-input modeling approach to quantify hippocampal nonlinear dynamic transformations.

Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

Interaction of Short-Term Neuronal Plasticity and Synaptic Plasticity Revealed by Nonlinear Systems Analysis in Dentate Granule Cells.

Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

Physiologically Plausible Stochastic Nonlinear Kernel Models of Spike Train to Spike Train Transformation.

Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

Nonlinear Dynamic Neural Network for Text-Independent Speaker Identification using Information Theoretic Learning Technology.

VLSI Implementation of a Nonlinear Neuronal Model: A "Neural Prosthesis" to Restore Hippocampal Trisynaptic Dynamics.

Modeling the Nonlinear Dynamic Interactions of the Lateral and the Medial Perforant Path of the Hippocampal Dentate Gyrus.

Modeling Hippocampal Nonlinear Dynamic Transformations with Principal Dynamic Modes.

2005

Detecting CA1 short-term plasticity variations associated with changes in stimulus intensity and extracellular medium composition.

Neurocomputing, 2005

2003

An efficient training algorithm for dynamic synapse neural networks using trust region methods.

Neural Networks, 2003

2001

Proc. IEEE, 2001

2000

A novel network for nonlinear modeling of neural systems with arbitrary point-process inputs.

Neural Networks, 2000

Building Replacement Parts for the Brain: A New Era in Neural Prothetcis, SIGMOD Conference 1999, Keynote Speech, Video

ACM SIGMOD Digit. Symp. Collect., 2000

Proceedings of the IEEE-INNS-ENNS International Joint Conference on Neural Networks, 2000

1999

Modeling of nonlinear nonstationary dynamic systems with a novel class of artificial neural networks.

IEEE Trans. Neural Networks, 1999

Neurocomputing, 1999

Neurocomputing, 1999

Neurocomputing, 1999

Decomposition of neural systems with nonlinear feedback using stimulus-response data.

Neurocomputing, 1999

1997

Proceedings of International Conference on Neural Networks (ICNN'97), 1997

1996

VLSI design for real-time signal processing based on biologically realistic neural models.

Proceedings of International Conference on Neural Networks (ICNN'96), 1996

A Compact Neural Network Based CDMA Receiver for Multimedia Wireless Communication.

Proceedings of the 1996 International Conference on Computer Design (ICCD '96), 1996

1995

VLSI Neural Network Implementation of a Hippocampal Model.

Proceedings of the 1995 IEEE International Symposium on Circuits and Systems, ISCAS 1995, Seattle, Washington, USA, April 30, 1995

A hippocampal model implementation using VLSI table-look-up and model-based approaches.

Proceedings of International Conference on Neural Networks (ICNN'95), Perth, WA, Australia, November 27, 1995

1994

Neural Networks, 1994