Yu Xue

Orcid: 0000-0002-9403-6869

Affiliations:
  • Huazhong University of Science and Technology, Key Laboratory of Molecular Biophysics of Ministry of Education, Wuhan, China
  • University of Science and Technology of China, Laboratory of Cellular Dynamics, Hefei, China


According to our database1, Yu Xue authored at least 44 papers between 2005 and 2023.

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Bibliography

2023
GPS 6.0: an updated server for prediction of kinase-specific phosphorylation sites in proteins.
Nucleic Acids Res., July, 2023

Dynamics of a Kuramoto Model with Two-Body and Three-Body Interactions.
Int. J. Bifurc. Chaos, February, 2023

AnimalTFDB 4.0: a comprehensive animal transcription factor database updated with variation and expression annotations.
Nucleic Acids Res., January, 2023

2022
CPLM 4.0: an updated database with rich annotations for protein lysine modifications.
Nucleic Acids Res., 2022

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022.
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Nucleic Acids Res., 2022

HemI 2.0: an online service for heatmap illustration.
Nucleic Acids Res., 2022

GPS-Uber: a hybrid-learning framework for prediction of general and E3-specific lysine ubiquitination sites.
Briefings Bioinform., 2022

2021
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021.
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Nucleic Acids Res., 2021

GPS-Palm: a deep learning-based graphic presentation system for the prediction of S-palmitoylation sites in proteins.
Briefings Bioinform., 2021

EPSD: a well-annotated data resource of protein phosphorylation sites in eukaryotes.
Briefings Bioinform., 2021

2020
GPS 5.0: An Update on the Prediction of Kinase-specific Phosphorylation Sites in Proteins.
Genom. Proteom. Bioinform., 2020

HybridSucc: A Hybrid-learning Architecture for General and Species-specific Succinylation Site Prediction.
Genom. Proteom. Bioinform., 2020

2019
iEKPD 2.0: an update with rich annotations for eukaryotic protein kinases, protein phosphatases and proteins containing phosphoprotein-binding domains.
Nucleic Acids Res., 2019

2018
iUUCD 2.0: an update with rich annotations for ubiquitin and ubiquitin-like conjugations.
Nucleic Acids Res., 2018

Predicting lysine-malonylation sites of proteins using sequence and predicted structural features.
J. Comput. Chem., 2018

Bioinformatics Commons: The Cornerstone of Life and Health Sciences.
Genom. Proteom. Bioinform., 2018

PTMD: A Database of Human Disease-associated Post-translational Modifications.
Genom. Proteom. Bioinform., 2018

DeepNitro: Prediction of Protein Nitration and Nitrosylation Sites by Deep Learning.
Genom. Proteom. Bioinform., 2018

2017
WERAM: a database of writers, erasers and readers of histone acetylation and methylation in eukaryotes.
Nucleic Acids Res., 2017

CGDB: a database of circadian genes in eukaryotes.
Nucleic Acids Res., 2017

Computational prediction of methylation types of covalently modified lysine and arginine residues in proteins.
Briefings Bioinform., 2017

2016
Precision Medicine: What Challenges Are We Facing?
Genom. Proteom. Bioinform., 2016

2015
AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors.
Nucleic Acids Res., 2015

MiCroKiTS 4.0: a database of midbody, centrosome, kinetochore, telomere and spindle.
Nucleic Acids Res., 2015

IBS: an illustrator for the presentation and visualization of biological sequences.
Bioinform., 2015

dbPSP: a curated database for protein phosphorylation sites in prokaryotes.
Database J. Biol. Databases Curation, 2015

2014
GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs.
Nucleic Acids Res., 2014

EKPD: a hierarchical database of eukaryotic protein kinases and protein phosphatases.
Nucleic Acids Res., 2014

CPLM: a database of protein lysine modifications.
Nucleic Acids Res., 2014

dbPPT: a comprehensive database of protein phosphorylation in plants.
Database J. Biol. Databases Curation, 2014

2013
UUCD: a family-based database of ubiquitin and ubiquitin-like conjugation.
Nucleic Acids Res., 2013

Systematic analysis of the Plk-mediated phosphoregulation in eukaryotes.
Briefings Bioinform., 2013

2012
CPSS: a computational platform for the analysis of small RNA deep sequencing data.
Bioinform., 2012

2011
CPLA 1.0: an integrated database of protein lysine acetylation.
Nucleic Acids Res., 2011

Prediction of novel pre-microRNAs with high accuracy through boosting and SVM.
Bioinform., 2011

2010
MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore.
Nucleic Acids Res., 2010

2008
Proteome-Wide Analysis of Amino Acid Absence in Composition and Plasticity.
Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Theoretical and Methodological Issues, 2008

2006
SUMOsp: a web server for sumoylation site prediction.
Nucleic Acids Res., 2006

MeMo: a web tool for prediction of protein methylation modifications.
Nucleic Acids Res., 2006

PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory.
BMC Bioinform., 2006

NBA-Palm: prediction of palmitoylation site implemented in Naïve Bayes algorithm.
BMC Bioinform., 2006

CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS).
Bioinform., 2006

HSPPIP: An Online Tool for Prediction of Protein-Protein Interactions in Humans.
Proceedings of the Computational Intelligence and Bioinformatics, 2006

2005
GPS: a comprehensive www server for phosphorylation sites prediction.
Nucleic Acids Res., 2005


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