Mohammed Alser
Orcid: 0000-0002-6117-3701
According to our database1,
Mohammed Alser
authored at least 51 papers
between 2011 and 2024.
Collaborative distances:
Collaborative distances:
Timeline
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Bibliography
2024
IEEE Trans. Computers, May, 2024
ApHMM: Accelerating Profile Hidden Markov Models for Fast and Energy-efficient Genome Analysis.
ACM Trans. Archit. Code Optim., March, 2024
2023
Scrooge: a fast and memory-frugal genomic sequence aligner for CPUs, GPUs, and ASICs.
Bioinform., May, 2023
A framework for high-throughput sequence alignment using real processing-in-memory systems.
Bioinform., May, 2023
CoRR, 2023
MetaFast: Enabling Fast Metagenomic Classification via Seed Counting and Edit Distance Approximation.
CoRR, 2023
SequenceLab: A Comprehensive Benchmark of Computational Methods for Comparing Genomic Sequences.
CoRR, 2023
CoRR, 2023
2022
Dataset, July, 2022
TargetCall: Eliminating the Wasted Computation in Basecalling via Pre-Basecalling Filtering.
CoRR, 2022
CoRR, 2022
COVIDHunter: COVID-19 pandemic wave prediction and mitigation via seasonality-aware modeling.
CoRR, 2022
Going From Molecules to Genomic Variations to Scientific Discovery: Intelligent Algorithms and Architectures for Intelligent Genome Analysis.
CoRR, 2022
Packaging, containerization, and virtualization of computational omics methods: Advances, challenges, and opportunities.
CoRR, 2022
GenStore: A High-Performance and Energy-Efficient In-Storage Computing System for Genome Sequence Analysis.
CoRR, 2022
Demeter: A Fast and Energy-Efficient Food Profiler Using Hyperdimensional Computing in Memory.
IEEE Access, 2022
GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read Mapping.
Proceedings of the 55th IEEE/ACM International Symposium on Microarchitecture, 2022
Proceedings of the 55th IEEE/ACM International Symposium on Microarchitecture, 2022
GenStore: In-Storage Filtering of Genomic Data for High-Performance and Energy-Efficient Genome Analysis.
Proceedings of the IEEE Computer Society Annual Symposium on VLSI, 2022
Proceedings of the IEEE Computer Society Annual Symposium on VLSI, 2022
SeGraM: a universal hardware accelerator for genomic sequence-to-graph and sequence-to-sequence mapping.
Proceedings of the ISCA '22: The 49th Annual International Symposium on Computer Architecture, New York, New York, USA, June 18, 2022
Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2022
High-throughput Pairwise Alignment with the Wavefront Algorithm using Processing-in-Memory.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2022
GenStore: a high-performance in-storage processing system for genome sequence analysis.
Proceedings of the ASPLOS '22: 27th ACM International Conference on Architectural Support for Programming Languages and Operating Systems, Lausanne, Switzerland, 28 February 2022, 2022
2021
IEEE Micro, 2021
pLUTo: In-DRAM Lookup Tables to Enable Massively Parallel General-Purpose Computation.
CoRR, 2021
COVIDHunter: An Accurate, Flexible, and Environment-Aware Open-Source COVID-19 Outbreak Simulation Model.
CoRR, 2021
SneakySnake: a fast and accurate universal genome pre-alignment filter for CPUs, GPUs and FPGAs.
Bioinform., 2021
IChannels: Exploiting Current Management Mechanisms to Create Covert Channels in Modern Processors.
Proceedings of the 48th ACM/IEEE Annual International Symposium on Computer Architecture, 2021
Proceedings of the ASPLOS '21: 26th ACM International Conference on Architectural Support for Programming Languages and Operating Systems, 2021
2020
Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm.
Bioinform., 2020
FlexWatts: A Power- and Workload-Aware Hybrid Power Delivery Network for Energy-Efficient Microprocessors.
Proceedings of the 53rd Annual IEEE/ACM International Symposium on Microarchitecture, 2020
GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis.
Proceedings of the 53rd Annual IEEE/ACM International Symposium on Microarchitecture, 2020
SysScale: Exploiting Multi-domain Dynamic Voltage and Frequency Scaling for Energy Efficient Mobile Processors.
Proceedings of the 47th ACM/IEEE Annual International Symposium on Computer Architecture, 2020
Proceedings of the 38th IEEE International Conference on Computer Design, 2020
Proceedings of the IEEE International Symposium on High Performance Computer Architecture, 2020
2019
AirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference Genomes.
CoRR, 2019
Accelerating the Understanding of Life's Code Through Better Algorithms and Hardware Design.
CoRR, 2019
Bioinform., 2019
2018
Accelerating the understanding of life\'s code through better algorithms and hardware design (Yaşamın kodunu anlamayı daha iyi algoritmalar ve donanım tasarımlarıyla hızlandırmak)
PhD thesis, 2018
GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies.
BMC Genom., 2018
2017
GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping.
Bioinform., 2017
2016
GateKeeper: Enabling Fast Pre-Alignment in DNA Short Read Mapping with a New Streaming Accelerator Architecture.
CoRR, 2016
2015
Proceedings of the Data Privacy Management, and Security Assurance, 2015
2013
Design and Characterization of Low Power and Low Noise Truly All-Digital Clock and Data Recovery Circuit for SERDES Devices.
J. Low Power Electron., 2013
2012
Design of an All-Digital Synchronized Frequency Multiplier Based on a Dual-Loop (D/FLL) Architecture.
VLSI Design, 2012
2011
An FPGA-based design and implementation of an all-digital serializer for inter module communication in SoC.
IEICE Electron. Express, 2011