Mikhail P. Ponomarenko

According to our database1, Mikhail P. Ponomarenko authored at least 25 papers between 1993 and 2015.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.



In proceedings 
PhD thesis 


On csauthors.net:


Sequence-based prediction of transcription upregulation by auxin in plants.
J. Bioinformatics and Computational Biology, 2015

How Multiple Auxin Responsive Elements May Interact in plant promoters: a Reverse Problem solution.
J. Bioinformatics and Computational Biology, 2013

Snps in the HIV-1 TATA Box and the Aids pandemic.
J. Bioinformatics and Computational Biology, 2010

Mining Genome Variation to Associate Genetic Disease with Mutation Alterations and Ortho/Paralogous Polimorphysms in Transcription Factor Binding Site.
International Journal on Artificial Intelligence Tools, 2005

rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation.
Nucleic Acids Research, 2003

ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro.
Nucleic Acids Research, 2002

SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data.
Nucleic Acids Research, 2002

Mining DNA sequences to predict sites which mutations cause genetic diseases.
Knowl.-Based Syst., 2002

rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations.
Nucleic Acids Research, 2001

ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another.
Nucleic Acids Research, 2001

Mining SNPs for Associating Disease Penetration with Transcription Factor Binding Site Alterations.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

Mining Genome Variation to Associate Disease with Transcription Factor Binding Site Alteration.
Proceedings of the 2nd IEEE International Symposium on Bioinformatics and Bioengineering, 2001

Methods for integration of heterogeneous information resources in molecular biology in the digital library GeneExpress.
Programming and Computer Software, 2000

SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation.
Nucleic Acids Research, 2000

Conformational and physicochemical DNA features specific for transcription factor binding sites.
Bioinformatics, 1999

Oligonucleotide frequency matrices addressed to recognizing functional DNA sites.
Bioinformatics, 1999

Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins.
Bioinformatics, 1999

Nucleosomal DNA property database.
Bioinformatics, 1999

Integrated databases and computer systems for studying eukaryotic gene expression.
Bioinformatics, 1999

Prediction of eukaryotic mRNA translational properties.
Bioinformatics, 1999

GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome.
Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998

Generating Programs for Predicting the Activity of Functional Sites.
Journal of Computational Biology, 1997

Identification of the significant conformational features of functional sites in B-DNA.
German Conference on Bioinformatics, 1997

TRRD and COMPEL Databases on Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences.
Proceedings of the Bioinformatics, German Conference on Bioinformatics, Leipzig, 1996

SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites.
Computer Applications in the Biosciences, 1993