Nikolay L. Podkolodny

According to our database, Nikolay L. Podkolodny authored at least 17 papers between 1998 and 2008.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2008

Approaches to the computer reconstruction of the biological networks.

Denis S. Miginsky, V. V. Suslov, Vladimir S. Timonov, D. A. Rasskazov, Natalia Yu. Sournina, Nikolay L. Podkolodny

Intell. Data Anal., 2008

TRRD: Technology for extraction, storage, and use of knowledge about the structural-functional organization of the transcriptional regulatory regions in the eukaryotic genes.

Nikolay A. Kolchanov, Elena V. Ignatieva, Olga A. Podkolodnaya, Elena A. Ananko, Tamara M. Khlebodarova, Irina L. Stepanenko, Tatyana I. Merkulova, Vasily M. Merkulov, Nikolay L. Podkolodny, Aida G. Romashchenko

Intell. Data Anal., 2008

2007

Application of Bioinformatics Resources for Genosensor Design.

Tamara M. Khlebodarova, Nina V. Tikunova, Alla V. Kachko, Irina L. Stepanenko, Nikolay L. Podkolodny, Nikolay A. Kolchanov

J. Bioinform. Comput. Biol., 2007

From Published Expression and Phenotype Data to Structured Knowledge: The Arabidopsis Gene Net Supplementary Database and Its Applications.

Denis K. Ponomaryov, Nadezhda Omelianchuk, Victoria V. Mironova, Eugene Zalevsky, Nikolay L. Podkolodny, Eric Mjolsness, Nikolay A. Kolchanov

Proceedings of the Knowledge Processing and Data Analysis - First International Conference, 2007

2005

GeneNet in 2005.

Elena A. Ananko, Nikolay L. Podkolodny, Irina L. Stepanenko, Olga A. Podkolodnaya, D. A. Rasskazov, Denis S. Miginsky, Vitali A. Likhoshvai, Alexander V. Ratushny, N. N. Podkolodnaya, Nikolay A. Kolchanov

Nucleic Acids Res., 2005

2002

Transcription Regulatory Regions Database (TRRD): its status in 2002.

Nikolay A. Kolchanov, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, Irina L. Stepanenko, Tatyana I. Merkulova, Mikhail A. Pozdnyakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko

Nucleic Acids Res., 2002

GeneNet: a database on structure and functional organisation of gene networks.

Elena A. Ananko, Nikolay L. Podkolodny, Irina L. Stepanenko, Elena V. Ignatieva, Olga A. Podkolodnaya, Nikolay A. Kolchanov

Nucleic Acids Res., 2002

GeneNet database: description and modeling of gene networks.

Nikolay A. Kolchanov, Eugenia A. Nedosekina, Elena A. Ananko, Vitali A. Likhoshvai, Nikolay L. Podkolodny, Alexander V. Ratushny, Irina L. Stepanenko, Olga A. Podkolodnaya, Elena V. Ignatieva, Yuri G. Matushkin

Silico Biol., 2002

2001

ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another.

Julia V. Ponomarenko, Dagmara P. Furman, Anatoly S. Frolov, Nikolay L. Podkolodny, Galina Orlova, Mikhail P. Ponomarenko, Nikolay A. Kolchanov, Akinori Sarai

Nucleic Acids Res., 2001

Nucleosome formation potential of exons, introns, and Alu repeats.

Victor G. Levitsky, Olga A. Podkolodnaya, Nikolay A. Kolchanov, Nikolay L. Podkolodny

Bioinform., 2001

Nucleosome formation potential of eukaryotic DNA: calculation and promoters analysis.

Victor G. Levitsky, Olga A. Podkolodnaya, Nikolay A. Kolchanov, Nikolay L. Podkolodny

Bioinform., 2001

2000

Transcription Regulatory Regions Database (TRRD): its status in 2000.

Nikolay A. Kolchanov, Olga A. Podkolodnaya, Elena A. Ananko, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, Fedor A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, I. M. Korostishevskaya, Aida G. Romashchenko, G. Christian Overton

Nucleic Acids Res., 2000

1999

Transcription Regulatory Regions Database (TRRD): its status in 1999.

Nikolay A. Kolchanov, Elena A. Ananko, Olga A. Podkolodnaya, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, Fedor A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko

Nucleic Acids Res., 1999

Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins.

Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Nikolay L. Podkolodny, Ludmila K. Savinkova, Nikolay A. Kolchanov, G. Christian Overton

Bioinform., 1999

Integrated databases and computer systems for studying eukaryotic gene expression.

Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Anatoly S. Frolov, Elena A. Ananko, Fedor A. Kolpakov, Elena V. Ignatieva, Olga A. Podkolodnaya, T. N. Goryachkovskaya, Irina L. Stepanenko, Tatyana I. Merkulova, V. V. Babenko, Y. V. Ponomarenko, Alexey V. Kochetov, Nikolay L. Podkolodny, Denis G. Vorobiev, Sergey V. Lavryushev, Dmitry A. Grigorovich, Yury V. Kondrakhin, Luciano Milanesi, Edgar Wingender, Victor V. Solovyev, G. Christian Overton

Bioinform., 1999

1998

Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL.

T. Heinemeyer, Edgar Wingender, Ingmar Reuter, Henning Hermjakob, Alexander E. Kel, Olga V. Kel-Margoulis, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, Fedor A. Kolpakov, Nikolay L. Podkolodny, Nikolay A. Kolchanov

Nucleic Acids Res., 1998

GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome.

Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Yury V. Kondrakhin, Anatoly S. Frolov, Fedor A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer

Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998