Dogu Baran Aydogan

According to our database, Dogu Baran Aydogan authored at least 19 papers between 2008 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

FreeSurfer 7 quality control: Key problem areas and importance of manual corrections.

Vesa Vahermaa, Dogu Baran Aydogan, Tuukka T. Raij, Reetta-Liina Armio, Heikki Laurikainen, Jari Saramäki, Jaana Suvisaari

NeuroImage, October, 2023

Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge.

Gabriel Girard, Jonathan Rafael-Patino, Raphaël Truffet, Dogu Baran Aydogan, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Sara Bosticardo, Ilaria Gabusi, Mario Ocampo-Pineda, Matteo Battocchio, Zuzana Piskorova, Pietro Bontempi, Simona Schiavi, Alessandro Daducci, Aleksandra Stafiej, Dominika Ciupek, Fabian Bogusz, Tomasz Pieciak, Matteo Frigo, Sara Sedlar, Samuel Deslauriers-Gauthier, Ivana Kojcic, Mauro Zucchelli, Hiba Laghrissi, Yang Ji, Rachid Deriche, Kurt G. Schilling, Bennett A. Landman, Alberto Cacciola, Gianpaolo Antonio Basile, Salvatore Bertino, Nancy Newlin, Praitayini Kanakaraj, Francois Rheault, Patryk Filipiak, Timothy M. Shepherd, Ying-Chia Lin, Dimitris G. Placantonakis, Fernando E. Boada, Steven H. Baete, Erick Hernandez-Gutierrez, Alonso Ramirez-Manzanares, Ricardo Coronado-Leija, Pablo Stack-Sánchez, Luis Concha, Maxime Descoteaux, Sina Mansour L, Caio Seguin, Andrew Zalesky, Kenji Marshall, Erick Jorge Canales-Rodríguez, Ye Wu, Sahar Ahmad, Pew-Thian Yap, Antoine Théberge, Florence Gagnon, Frédéric Massi, Elda Fischi Gomez, Remy Gardier, Juan Luis Villarreal-Haro, Marco Pizzolato, Emmanuel Caruyer, Jean-Philippe Thiran

NeuroImage, August, 2023

brainlife.io: A decentralized and open source cloud platform to support neuroscience research.

Soichi Hayashi, Bradley Caron, Anibal Solon Heinsfeld, Sophia Vinci-Booher, Brent C. McPherson, Daniel N. Bullock, Giulia Berto, J. Guiomar Niso, Sandra Hanekamp, Daniel Levitas, Lindsey Kitchell, Josiah Leong, Filipi N. Silva, Serge Koudoro, Hanna Willis, Jasleen Jolly, Derek Pisner, Taylor Zuidema, Jan Kurzwaski, Koulla Mikellidou, Aurore Bussalb, Christopher Rorden, Conner Victory, Dheeraj Bhatia, Dogu Baran Aydogan, Frank C. Yeh, Franco Delogu, Javier Guaje, Jelle Veraart, Jeremy Fischer, Joshua Faskowitz, Maximilien Chaumon, Ricardo Fabrega, David Hunt, Shawn McKee, Shaw T. Brown, Stephanie Heyman, Vittorio Iacovella, Amanda Mejia, Daniele Marinazzo, R. Cameron Craddock, Emanuele Olivetti, Jamie Hanson, Paolo Avesani, Eleftherios Garyfallidis, Daniel Stanzione, James P. Carson, Robert Henschel, David Y. Hancock, Craig A. Stewart, David M. Schnyer, Damian Eke, Russell A. Poldrack, Nathalie George, Holly Bridge, Ilaria Sani, Winrich Freiwald, Aina Puce, Nicholas Port, Franco Pestilli

CoRR, 2023

Why is the Winner the Best?

Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Sharib Ali, Vincent Andrearczyk, Marc Aubreville, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Veronika Cheplygina, Marie Daum, Marleen de Bruijne, Adrien Depeursinge, Reuben Dorent, Jan Egger, David G. Ellis, Sandy Engelhardt, Melanie Ganz, Noha M. Ghatwary, Gabriel Girard, Patrick Godau, Anubha Gupta, Lasse Hansen, Kanako Harada, Mattias P. Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Pierre Jannin, A. Emre Kavur, Oldrich Kodym, Michal Kozubek, Jianning Li, Hongwei Bran Li, Jun Ma, Carlos Martín-Isla, Bjoern H. Menze, J. Alison Noble, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Tim Rädsch, Jonathan Rafael-Patino, Vivek Singh Bawa, Stefanie Speidel, Carole H. Sudre, Kimberlin M. H. van Wijnen, Martin Wagner, D. Wei, Amine Yamlahi, Moi Hoon Yap, C. Yuan, Maximilian Zenk, A. Zia, David Zimmerer, Dogu Baran Aydogan, Binod Bhattarai, Louise Bloch, Raphael Brüngel, J. Cho, C. Choi, Q. Dou, Ivan Ezhov, Christoph M. Friedrich, C. Fuller, Rebati Raman Gaire, Adrian Galdran, Álvaro García-Faura, Maria Grammatikopoulou, S. Hong, Mostafa Jahanifar, I. Jang, Abdolrahim Kadkhodamohammadi, I. Kang, Florian Kofler, S. Kondo, Hugo Jaco Kuijf, M. Li, M. Luu, Tomaz Martincic, Pedro Morais, Mohamed A. Naser, Bruno Oliveira, David Owen, S. Pang, J. Park, S. Park, Szymon Plotka, Élodie Puybareau, Nasir M. Rajpoot, K. Ryu, Numan Saeed, Adam Shephard, Pengcheng Shi, Dejan Stepec, Ronast Subedi, Guillaume Tochon, Helena R. Torres, Hélène Urien, João L. Vilaça, Kareem A. Wahid, H. Wang, J. Wang, L. Wang, X. Wang, Benedikt Wiestler, Marek Wodzinski, F. Xia, J. Xie, Z. Xiong, S. Yang, Y. Yang, Z. Zhao, Klaus H. Maier-Hein, Paul F. Jäger, Annette Kopp-Schneider, Lena Maier-Hein

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2023

2022

Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI.

Chiara Maffei, Gabriel Girard, Kurt G. Schilling, Dogu Baran Aydogan, Nagesh Adluru, Andrey Zhylka, Ye Wu, Matteo Mancini, Andac Hamamci, Alessia Sarica, Achille Teillac, Steven H. Baete, Davood Karimi, Fang-Cheng Yeh, Mert E. Yildiz, Ali Gholipour, Yann Bihan-Poudec, Bassem Hiba, Andrea Quattrone, Aldo Quattrone, Tommy Boshkovski, Nikola Stikov, Pew-Thian Yap, Alberto De Luca, Josien P. W. Pluim, Alexander Leemans, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Bennett A. Landman, Erick Jorge Canales-Rodríguez, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Gaëtan Rensonnet, Simona Schiavi, Alessandro Daducci, Marco Pizzolato, Elda Fischi Gomez, Jean-Philippe Thiran, George Dai, Giorgia Grisot, Nikola Lazovski, Santi Puch, Marc Ramos, Paulo Rodrigues, Vesna Prckovska, Robert Jones, Julia Lehman, Suzanne N. Haber, Anastasia Yendiki

NeuroImage, 2022

2021

Parallel Transport Tractography.

Dogu Baran Aydogan, Yonggang Shi

IEEE Trans. Medical Imaging, 2021

Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset?

Kurt G. Schilling, François Rheault, Laurent Petit, Colin B. Hansen, Vishwesh Nath, Fang-Cheng Yeh, Gabriel Girard, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Elda Fischi Gomez, Marco Pizzolato, Mario Ocampo-Pineda, Simona Schiavi, Erick Jorge Canales-Rodríguez, Alessandro Daducci, Cristina Granziera, Giorgio M. Innocenti, Jean-Philippe Thiran, Laura Mancini, Stephen J. Wastling, Sirio Cocozza, Maria Petracca, Giuseppe Pontillo, Matteo Mancini, Sjoerd B. Vos, Vejay N. Vakharia, John S. Duncan, Helena Melero, Lidia Manzanedo, Emilio Sanz-Morales, Ángel Peña-Melián, Fernando Calamante, Arnaud Attye, Ryan P. Cabeen, Laura Korobova, Arthur W. Toga, Anupa Ambili Vijayakumari, Drew Parker, Ragini Verma, Ahmed M. Radwan, Stefan Sunaert, Louise Emsell, Alberto De Luca, Alexander Leemans, Claude J. Bajada, Hamied A. Haroon, Hojjatollah Azadbakht, Maxime Chamberland, Sila Genc, Chantal M. W. Tax, Ping Hong Yeh, Rujirutana Srikanchana, Colin D. Mcknight, Joseph Yuan-Mou Yang, Jian Chen, Claire E. Kelly, Chun-Hung Yeh, Jérôme Cochereau, Jerome J. Maller, Thomas Welton, Fabien Almairac, Kiran K. Seunarine, Chris A. Clark, Fan Zhang, Nikos Makris, Alexandra J. Golby, Yogesh Rathi, Lauren J. O'Donnell, Yihao Xia, Dogu Baran Aydogan, Yonggang Shi, Francisco Guerreiro Fernandes, Mathijs Raemaekers, Shaun Warrington, Stijn Michielse, Alonso Ramirez-Manzanares, Luis Concha, Ramón Aranda, Mariano Rivera Meraz, Garikoitz Lerma-Usabiaga, Lucas Roitman, Lucius S. Fekonja, Navona Calarco, Michael Joseph, Hajer Nakua, Aristotle N. Voineskos, Philippe Karan, Gabrielle Grenier, Jon Haitz Legarreta, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Andrew L. Alexander, Koji Kamagata, Yuya Saito, Wataru Uchida, Christina Andica, Masahiro Abe, Roza G. Bayrak, Claudia A. M. Gandini Wheeler-Kingshott, Egidio D'Angelo, Fulvia Palesi, Giovanni Savini, Nicolò Rolandi, Pamela Guevara, Josselin Houenou, Narciso López-López, Jean-François Mangin, Cyril Poupon, Claudio Román, Andrea Vázquez, Chiara Maffei, Mavilde Arantes, José Paulo Andrade, Susana Maria Silva, Vince D. Calhoun, Eduardo Caverzasi, Simone Sacco, Michael Lauricella, Franco Pestilli, Daniel Bullock, Yang Zhan, Edith Brignoni-Pérez, Catherine Lebel, Jess E Reynolds, Igor Nestrasil, René Labounek, Christophe Lenglet, Amy Paulson, Stefania Aulicka, Sarah R. Heilbronner, Katja Heuer, Bramsh Qamar Chandio, Javier Guaje, Wei Tang, Eleftherios Garyfallidis, Rajikha Raja, Adam W. Anderson, Bennett A. Landman, Maxime Descoteaux

NeuroImage, 2021

2019

Limits to anatomical accuracy of diffusion tractography using modern approaches.

Kurt G. Schilling, Vishwesh Nath, Colin B. Hansen, Prasanna Parvathaneni, Justin A. Blaber, Yurui Gao, Peter Neher, Dogu Baran Aydogan, Yonggang Shi, Mario Ocampo-Pineda, Simona Schiavi, Alessandro Daducci, Gabriel Girard, Muhamed Barakovic, Jonathan Rafael-Patino, David Romascano, Gaëtan Rensonnet, Marco Pizzolato, Bennett A. Landman

NeuroImage, 2019

2018

Modeling topographic regularity in structural brain connectivity with application to tractogram filtering.

Junyan Wang, Dogu Baran Aydogan, Rohit Varma, Arthur W. Toga, Yonggang Shi

NeuroImage, 2018

Tracking and validation techniques for topographically organized tractography.

Dogu Baran Aydogan, Yonggang Shi

NeuroImage, 2018

2017

Topographic Regularity for Tract Filtering in Brain Connectivity.

Junyan Wang, Dogu Baran Aydogan, Rohit Varma, Arthur W. Toga, Yonggang Shi

Proceedings of the Information Processing in Medical Imaging, 2017

2016

Probabilistic Tractography for Topographically Organized Connectomes.

Dogu Baran Aydogan, Yonggang Shi

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

2015

Track Filtering via Iterative Correction of TDI Topology.

Dogu Baran Aydogan, Yonggang Shi

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

2013

Simulation of Microporous Architecture's Effects on Fluid Flow Characteristics in Cell Seeding.

Ashkan Bonabi, Dogu Baran Aydogan, Jari A. K. Hyttinen

Proceedings of the 15th International Conference on Computer Modelling and Simulation, 2013

Analysis of Trabecular Bone Microstructure Using Contour Tree Connectivity.

Dogu Baran Aydogan, Niko Moritz, Hannu T. Aro, Jari A. K. Hyttinen

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Contour tree connectivity of binary images from algebraic graph theory.

Dogu Baran Aydogan, Jari A. K. Hyttinen

Proceedings of the IEEE International Conference on Image Processing, 2013

2012

Binary image representation by contour trees.

Dogu Baran Aydogan, Jari A. K. Hyttinen

Proceedings of the Medical Imaging 2012: Image Processing, 2012

2009

2D texture based classification, segmentation and 3D orientation estimation of tissues using DT-CWT feature extraction methods.

Dogu Baran Aydogan, Markus Hannula, Tuukka Arola, Prasun Dastidar, Jari A. K. Hyttinen

Data Knowl. Eng., 2009

2008

Texture Based Classification and Segmentation of Tissues Using DT-CWT Feature Extraction Methods.

Dogu Baran Aydogan, Markus Hannula, Tuukka Arola, Prasun Dastidar, Jari A. K. Hyttinen

Proceedings of the Twenty-First IEEE International Symposium on Computer-Based Medical Systems, 2008