Florian Kofler

According to our database, Florian Kofler authored at least 39 papers between 2019 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

A Dempster-Shafer Approach to Trustworthy AI With Application to Fetal Brain MRI Segmentation.

Lucas Fidon, Michael Aertsen, Florian Kofler, Andrea Bink, Anna L. David, Thomas Deprest, Doaa Emam, Frédéric Guffens, András Jakab, Gregor Kasprian, Patric Kienast, Andrew Melbourne, Bjoern H. Menze, Nada Mufti, Ivana Pogledic, Daniela Prayer, Marlene Stuempflen, Esther Van Elslander, Sébastien Ourselin, Jan Deprest, Tom Vercauteren

IEEE Trans. Pattern Anal. Mach. Intell., May, 2024

<i>Where is VALDO?</i> VAscular Lesions Detection and segmentatiOn challenge at MICCAI 2021.

Carole H. Sudre, Kimberlin M. H. van Wijnen, Florian Dubost, Hieab Adams, David Atkinson, Frederik Barkhof, Mahlet A. Birhanu, Esther E. Bron, Robin Camarasa, Nish Chaturvedi, Yuan Chen, Zihao Chen, Shuai Chen, Qi Dou, Tavia E. Evans, Ivan Ezhov, Haojun Gao, Marta Gironés-Sangüesa, Juan Domingo Gispert, Beatriz Gomez Anson, Alun D. Hughes, Mohammad Arfan Ikram, Silvia Ingala, Hans Rolf Jäger, Florian Kofler, Hugo J. Kuijf, Denis Kutnar, Minho Lee, Bo Li, Luigi Lorenzini, Bjoern H. Menze, José Luis Molinuevo, Yiwei Pan, Élodie Puybareau, Rafael Rehwald, Ruisheng Su, Pengcheng Shi, Lorna Smith, Therese Tillin, Guillaume Tochon, Hélène Urien, Bas H. M. van der Velden, Isabelle F. van der Velpen, Benedikt Wiestler, Frank J. Wolters, Pinar Yilmaz, Marius de Groot, Meike W. Vernooij, Marleen de Bruijne

Medical Image Anal., January, 2024

A Robust Ensemble Algorithm for Ischemic Stroke Lesion Segmentation: Generalizability and Clinical Utility Beyond the ISLES Challenge.

Ezequiel de la Rosa, Mauricio Reyes, Sook-Lei Liew, Alexandre Hutton, Roland Wiest, Johannes Kaesmacher, Uta Hanning, Arsany Hakim, Richard Zubal, Waldo Valenzuela, David Robben, Diana Maria Sima, Vincenzo Anania, Arne Brys, James A. Meakin, Anne Mickan, Gabriel Broocks, Christian Heitkamp, Shengbo Gao, Kongming Liang, Ziji Zhang, Md Mahfuzur Rahman Siddiquee, Andriy Myronenko, Pooya Ashtari, Sabine Van Huffel, Hyun-su Jeong, Chiho Yoon, Chulhong Kim, Jiayu Huo, Sébastien Ourselin, Rachel Sparks, Albert Clèrigues, Arnau Oliver, Xavier Lladó, Liam F. Chalcroft, Ioannis Pappas, Jeroen Bertels, Ewout Heylen, Juliette Moreau, Nima Hatami, Carole Frindel, Abdul Qayyum, Moona Mazher, Domenec Puig, Shao-Chieh Lin, Chun-Jung Juan, Tianxi Hu, Lyndon Boone, Maged Goubran, Yi-Jui Liu, Susanne Wegener, Florian Kofler, Ivan Ezhov, Suprosanna Shit, Moritz Roman Hernandez Petzsche, Bjoern H. Menze, Jan S. Kirschke, Benedikt Wiestler

CoRR, 2024

Denoising Diffusion Models for 3D Healthy Brain Tissue Inpainting.

Alicia Durrer, Julia Wolleb, Florentin Bieder, Paul Friedrich, Lester Melie-García, Mario Ocampo-Pineda, Cosmin I. Bercea, Ibrahim Ethem Hamamci, Benedikt Wiestler, Marie Piraud, Özgür Yaldizli, Cristina Granziera, Bjoern H. Menze, Philippe C. Cattin, Florian Kofler

CoRR, 2024

A Learnable Prior Improves Inverse Tumor Growth Modeling.

Jonas Weidner, Ivan Ezhov, Michal Balcerak, Marie-Christin Metz, Sergey Litvinov, Sebastian Kaltenbach, Leonhard F. Feiner, Laurin Lux, Florian Kofler, Jana Lipková, Jonas Latz, Daniel Rueckert, Bjoern H. Menze, Benedikt Wiestler

CoRR, 2024

SPINEPS - Automatic Whole Spine Segmentation of T2-weighted MR images using a Two-Phase Approach to Multi-class Semantic and Instance Segmentation.

Hendrik Kristian Möller, Robert Graf, Joachim Schmitt, Benjamin Keinert, Matan Atad, Anjany Sekuboyina, Felix Streckenbach, Hanna Schön, Florian Kofler, Thomas Kröncke, Stefanie Bette, Stefan Willich, Thomas Keil, Thoralf Niendorf, Tobias Pischon, Beate Endemann, Bjoern H. Menze, Daniel Rueckert, Jan S. Kirschke

CoRR, 2024

2023

Learn-Morph-Infer: A new way of solving the inverse problem for brain tumor modeling.

Ivan Ezhov, Kevin Scibilia, Katharina Franitza, Felix Steinbauer, Suprosanna Shit, Lucas Zimmer, Jana Lipková, Florian Kofler, Johannes C. Paetzold, Luca Canalini, Diana Waldmannstetter, Martin J. Menten, Marie Metz, Benedikt Wiestler, Bjoern H. Menze

Medical Image Anal., 2023

The Liver Tumor Segmentation Benchmark (LiTS).

Patrick Bilic, Patrick Ferdinand Christ, Hongwei Li, Eugene Vorontsov, Avi Ben-Cohen, Georgios Kaissis, Adi Szeskin, Colin Jacobs, Gabriel Efrain Humpire Mamani, Gabriel Chartrand, Fabian Lohöfer, Julian Walter Holch, Wieland H. Sommer, Felix Hofmann, Alexandre Hostettler, Naama Lev-Cohain, Michal Drozdzal, Michal Marianne Amitai, Refael Vivanti, Jacob Sosna, Ivan Ezhov, Anjany Sekuboyina, Fernando Navarro, Florian Kofler, Johannes C. Paetzold, Suprosanna Shit, Xiaobin Hu, Jana Lipková, Markus Rempfler, Marie Piraud, Jan Kirschke, Benedikt Wiestler, Zhiheng Zhang, Christian Hülsemeyer, Marcel Beetz, Florian Ettlinger, Michela Antonelli, Woong Bae, Miriam Bellver, Lei Bi, Hao Chen, Grzegorz Chlebus, Erik B. Dam, Qi Dou, Chi-Wing Fu, Bogdan Georgescu, Xavier Giró-i-Nieto, Felix Grün, Xu Han, Pheng-Ann Heng, Jürgen Hesser, Jan Hendrik Moltz, Christian Igel, Fabian Isensee, Paul Jäger, Fucang Jia, Krishna Chaitanya Kaluva, Mahendra Khened, Ildoo Kim, Jae-Hun Kim, Sungwoong Kim, Simon Kohl, Tomasz K. Konopczynski, Avinash Kori, Ganapathy Krishnamurthi, Fan Li, Hongchao Li, Junbo Li, Xiaomeng Li, John S. Lowengrub, Jun Ma, Klaus H. Maier-Hein, Kevis-Kokitsi Maninis, Hans Meine, Dorit Merhof, Akshay Pai, Mathias Perslev, Jens Petersen, Jordi Pont-Tuset, Jin Qi, Xiaojuan Qi, Oliver Rippel, Karsten Roth, Ignacio Sarasua, Andrea Schenk, Zengming Shen, Jordi Torres, Christian Wachinger, Chunliang Wang, Leon Weninger, Jianrong Wu, Daguang Xu, Xiaoping Yang, Simon Chun-Ho Yu, Yading Yuan, Miao Yue, Liping Zhang, Manuel Jorge Cardoso, Spyridon Bakas, Rickmer Braren, Volker Heinemann, Christopher Pal, An Tang, Samuel Kadoury, Luc Soler, Bram van Ginneken, Hayit Greenspan, Leo Joskowicz, Bjoern H. Menze

Medical Image Anal., 2023

Benchmarking the CoW with the TopCoW Challenge: Topology-Aware Anatomical Segmentation of the Circle of Willis for CTA and MRA.

Kaiyuan Yang, Fabio Musio, Yihui Ma, Norman Juchler, Johannes C. Paetzold, Rami Al-Maskari, Luciano Höher, Hongwei Bran Li, Ibrahim Ethem Hamamci, Anjany Sekuboyina, Suprosanna Shit, Houjing Huang, Diana Waldmannstetter, Florian Kofler, Fernando Navarro, Martin J. Menten, Ivan Ezhov, Daniel Rueckert, Iris N. Vos, Ynte M. Ruigrok, Birgitta K. Velthuis, Hugo J. Kuijf, Julien Hämmerli, Catherine Wurster, Philippe Bijlenga, Laura Westphal, Jeroen Bisschop, Elisa Colombo, Hakim Baazaoui, Andrew Makmur, James Hallinan, Benedikt Wiestler, Jan S. Kirschke, Roland Wiest, Emmanuel Montagnon, Laurent Létourneau-Guillon, Adrian Galdran, Francesco Galati, Daniele Falcetta, Maria A. Zuluaga, Chaolong Lin, Haoran Zhao, Zehan Zhang, Sinyoung Ra, Jongyun Hwang, Hyunjin Park, Junqiang Chen, Marek Wodzinski, Henning Müller, et al.

CoRR, 2023

Panoptica - instance-wise evaluation of 3D semantic and instance segmentation maps.

Florian Kofler, Hendrik Kristian Möller, Josef A. Buchner, Ezequiel de la Rosa, Ivan Ezhov, Marcel Rosier, Isra Mekki, Suprosanna Shit, Moritz Negwer, Rami Al-Maskari, Ali Ertürk, Shankeeth Vinayahalingam, Fabian Isensee, Sarthak Pati, Daniel Rueckert, Jan S. Kirschke, Stefan K. Ehrlich, Annika Reinke, Bjoern H. Menze, Benedikt Wiestler, Marie Piraud

CoRR, 2023

Framing image registration as a landmark detection problem for better representation of clinical relevance.

Diana Waldmannstetter, Benedikt Wiestler, Julian Schwarting, Ivan Ezhov, Marie Metz, Spyridon Bakas, Bhakti Baheti, Satrajit Chakrabarty, Jan S. Kirschke, Rolf A. Heckemann, Marie Piraud, Florian Kofler, Bjoern H. Menze

CoRR, 2023

The Brain Tumor Segmentation (BraTS) Challenge 2023: Glioma Segmentation in Sub-Saharan Africa Patient Population (BraTS-Africa).

Maruf Adewole, Jeffrey D. Rudie, Anu Gbadamosi, Oluyemisi Toyobo, Raymond Confidence, Dong Zhang, Olubukola Omidiji, Rachel Akinola, Mohammad Abba Suwaid, Adaobi Emegoakor, Nancy Ojo, Kenneth Aguh, Chinasa Kalaiwo, Gabriel Babatunde, Afolabi Ogunleye, Yewande Gbadamosi, Kator Iorpagher, Evan Calabrese, Mariam Aboian, Marius George Linguraru, Jake Albrecht, Benedikt Wiestler, Florian Kofler, Anastasia Janas, Dominic LaBella, Anahita Fathi Kazerooni, Hongwei Bran Li, Juan Eugenio Iglesias, Keyvan Farahani, James A. Eddy, Timothy Bergquist, Verena Chung, Russell Takeshi Shinohara, Walter I. Wiggins, Zachary Reitman, Chunhao Wang, Xinyang Liu, Zhifan Jiang, Ariana Familiar, Koen Van Leemput, Christina Bukas, Marie Piraud, Gian Marco Conte, Elaine Johanson, Zeke Meier, Bjoern H. Menze, Ujjwal Baid, Spyridon Bakas, Farouk Dako, Abiodun Fatade, Udunna Anazodo

CoRR, 2023

The Brain Tumor Segmentation (BraTS) Challenge 2023: Focus on Pediatrics (CBTN-CONNECT-DIPGR-ASNR-MICCAI BraTS-PEDs).

Anahita Fathi Kazerooni, Nastaran Khalili, Xinyang Liu, Debanjan Haldar, Zhifan Jiang, Syed Muhammad Anwar, Jake Albrecht, Maruf Adewole, Udunna Anazodo, Hannah Anderson, Sina Bagheri, Ujjwal Baid, Timothy Bergquist, Evan Calabrese, Verena Chung, Gian Marco Conte, Farouk Dako, James A. Eddy, Ivan Ezhov, Ariana Familiar, Keyvan Farahani, Shuvanjan Haldar, Juan Eugenio Iglesias, Anastasia Janas, Elaine Johanson, Florian Kofler, Dominic LaBella, Koen Van Leemput, Hongwei Bran Li, Nazanin Maleki, Zeke Meier, Bjoern H. Menze, Ahmed W. Moawad, Marie Piraud, Tina Poussaint, Zachary Reitman, Jeffrey D. Rudie, Ibraheem Salman Shaikh, Russell Taki Shinohara, Wenxin Tu, Karthik Viswanathan, Chunhao Wang, Jeffrey B. Ware, Benedikt Wiestler, Walter I. Wiggins, Anna Zapaishchykova, Mariam Aboian, Miriam Bornhorst, Peter de Blank, Michelle Deutsch, Maryam Fouladi, Lindsey Hoffman, Benjamin H. Kann, Margot Lazow, Leonie Mikael, Ali Nabavizadeh, Roger J. Packer, Adam C. Resnick, Brian Rood, Arastoo Vossough, Spyridon Bakas, Marius George Linguraru

CoRR, 2023

The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn).

Hongwei Bran Li, Gian Marco Conte, Syed Muhammad Anwar, Florian Kofler, Koen Van Leemput, Marie Piraud, Ivan Ezhov, Felix Meissen, Maruf Adewole, Anastasia Janas, Anahita Fathi Kazerooni, Dominic LaBella, Ahmed W. Moawad, Keyvan Farahani, James A. Eddy, Timothy Bergquist, Verena Chung, Russell Takeshi Shinohara, Farouk Dako, Walter I. Wiggins, Zachary Reitman, Chunhao Wang, Xinyang Liu, Zhifan Jiang, Ariana Familiar, Elaine Johanson, Zeke Meier, Christos Davatzikos, John B. Freymann, Justin S. Kirby, Michel Bilello, Hassan M. Fathallah-Shaykh, Roland Wiest, Jan Kirschke, Rivka R. Colen, Aikaterini Kotrotsou, Pamela LaMontagne, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Marc-André Weber, Abhishek Mahajan, Suyash Mohan, John Mongan, Christopher Hess, Soonmee Cha, Javier E. Villanueva-Meyer, Errol Colak, Priscila Crivellaro, András Jakab, Jake Albrecht, Udunna Anazodo, Mariam Aboian, Thomas Yu, Ujjwal Baid, Spyridon Bakas, Marius George Linguraru, Bjoern H. Menze, Juan Eugenio Iglesias, Benedikt Wiestler

CoRR, 2023

The Brain Tumor Segmentation (BraTS) Challenge 2023: Local Synthesis of Healthy Brain Tissue via Inpainting.

Florian Kofler, Felix Meissen, Felix Steinbauer, Robert Graf, Eva Oswald, Ezequiel de la Rosa, Hongwei Bran Li, Ujjwal Baid, Florian A. Hölzl, Özgün Turgut, Izabela Horvath, Diana Waldmannstetter, Christina Bukas, Maruf Adewole, Syed Muhammad Anwar, Anastasia Janas, Anahita Fathi Kazerooni, Dominic LaBella, Ahmed W. Moawad, Keyvan Farahani, James A. Eddy, Timothy Bergquist, Verena Chung, Russell Takeshi Shinohara, Farouk Dako, Walter I. Wiggins, Zachary Reitman, Chunhao Wang, Xinyang Liu, Zhifan Jiang, Ariana Familiar, Gian Marco Conte, Elaine Johanson, Zeke Meier, Christos Davatzikos, John B. Freymann, Justin S. Kirby, Michel Bilello, Hassan M. Fathallah-Shaykh, Roland Wiest, Jan Kirschke, Rivka R. Colen, Aikaterini Kotrotsou, Pamela LaMontagne, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Marc-André Weber, Abhishek Mahajan, Suyash Mohan, John Mongan, Christopher Hess, Soonmee Cha, Javier E. Villanueva-Meyer, Errol Colak, Priscila Crivellaro, András Jakab, Jake Albrecht, Udunna Anazodo, Mariam Aboian, Juan Eugenio Iglesias, Koen Van Leemput, Spyridon Bakas, Daniel Rueckert, Benedikt Wiestler, Ivan Ezhov, Marie Piraud, Bjoern H. Menze

CoRR, 2023

The ASNR-MICCAI Brain Tumor Segmentation (BraTS) Challenge 2023: Intracranial Meningioma.

Dominic LaBella, Maruf Adewole, Michelle Alonso-Basanta, Talissa Altes, Syed Muhammad Anwar, Ujjwal Baid, Timothy Bergquist, Radhika Bhalerao, Sully Chen, Verena Chung, Gian Marco Conte, Farouk Dako, James A. Eddy, Ivan Ezhov, Devon Godfrey, Fathi Hilal, Ariana Familiar, Keyvan Farahani, Juan Eugenio Iglesias, Zhifan Jiang, Elaine Johanson, Anahita Fathi Kazerooni, Collin Kent, John Kirkpatrick, Florian Kofler, Koen Van Leemput, Hongwei Bran Li, Xinyang Liu, Aria Mahtabfar, Shan McBurney-Lin, Ryan McLean, Zeke Meier, Ahmed W. Moawad, John Mongan, Pierre Nedelec, Maxence Pajot, Marie Piraud, Arif Rashid, Zachary Reitman, Russell Takeshi Shinohara, Yury Velichko, Chunhao Wang, Pranav I. Warman, Walter I. Wiggins, Mariam Aboian, Jake Albrecht, Udunna Anazodo, Spyridon Bakas, Adam E. Flanders, Anastasia Janas, Goldey Khanna, Marius George Linguraru, Bjoern H. Menze, Ayman Nada, Andreas M. Rauschecker, Jeffrey D. Rudie, Nourel Hoda Tahon, Javier E. Villanueva-Meyer, Benedikt Wiestler, Evan Calabrese

CoRR, 2023

Primitive Simultaneous Optimization of Similarity Metrics for Image Registration.

Diana Waldmannstetter, Florian Kofler, Benedikt Wiestler, Julian Schwarting, Ivan Ezhov, Marie Metz, Daniel Rueckert, Jan S. Kirschke, Marie Piraud, Bjoern H. Menze

CoRR, 2023

Understanding metric-related pitfalls in image analysis validation.

Annika Reinke, Minu Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B. Blaschko, Florian Büttner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir M. Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein

CoRR, 2023

Vesselformer: Towards Complete 3D Vessel Graph Generation from Images.

Chinmay Prabhakar, Suprosanna Shit, Johannes C. Paetzold, Ivan Ezhov, Rajat Koner, Hongwei Li, Florian Sebastian Kofler, Bjoern H. Menze

Proceedings of the Medical Imaging with Deep Learning, 2023

Approaching Peak Ground Truth.

Florian Kofler, Johannes Wahle, Ivan Ezhov, Sophia J. Wagner, Rami Al-Maskari, Emilia Gryska, Mihail I. Todorov, Christina Bukas, Felix Meissen, Tingying Peng, Ali Ertürk, Daniel Rueckert, Rolf A. Heckemann, Jan Kirschke, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze, Marie Piraud

Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

blob loss: Instance Imbalance Aware Loss Functions for Semantic Segmentation.

Florian Kofler, Suprosanna Shit, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Rami Al-Maskari, Hongwei Bran Li, Harsharan Bhatia, Timo Loehr, Marie Piraud, Ali Ertürk, Jan Kirschke, Jan C. Peeken, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze

Proceedings of the Information Processing in Medical Imaging, 2023

Why is the Winner the Best?

Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Sharib Ali, Vincent Andrearczyk, Marc Aubreville, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Veronika Cheplygina, Marie Daum, Marleen de Bruijne, Adrien Depeursinge, Reuben Dorent, Jan Egger, David G. Ellis, Sandy Engelhardt, Melanie Ganz, Noha M. Ghatwary, Gabriel Girard, Patrick Godau, Anubha Gupta, Lasse Hansen, Kanako Harada, Mattias P. Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Pierre Jannin, A. Emre Kavur, Oldrich Kodym, Michal Kozubek, Jianning Li, Hongwei Bran Li, Jun Ma, Carlos Martín-Isla, Bjoern H. Menze, J. Alison Noble, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Tim Rädsch, Jonathan Rafael-Patino, Vivek Singh Bawa, Stefanie Speidel, Carole H. Sudre, Kimberlin M. H. van Wijnen, Martin Wagner, D. Wei, Amine Yamlahi, Moi Hoon Yap, C. Yuan, Maximilian Zenk, A. Zia, David Zimmerer, Dogu Baran Aydogan, Binod Bhattarai, Louise Bloch, Raphael Brüngel, J. Cho, C. Choi, Q. Dou, Ivan Ezhov, Christoph M. Friedrich, C. Fuller, Rebati Raman Gaire, Adrian Galdran, Álvaro García-Faura, Maria Grammatikopoulou, S. Hong, Mostafa Jahanifar, I. Jang, Abdolrahim Kadkhodamohammadi, I. Kang, Florian Kofler, S. Kondo, Hugo Jaco Kuijf, M. Li, M. Luu, Tomaz Martincic, Pedro Morais, Mohamed A. Naser, Bruno Oliveira, David Owen, S. Pang, J. Park, S. Park, Szymon Plotka, Élodie Puybareau, Nasir M. Rajpoot, K. Ryu, Numan Saeed, Adam Shephard, Pengcheng Shi, Dejan Stepec, Ronast Subedi, Guillaume Tochon, Helena R. Torres, Hélène Urien, João L. Vilaça, Kareem A. Wahid, H. Wang, J. Wang, L. Wang, X. Wang, Benedikt Wiestler, Marek Wodzinski, F. Xia, J. Xie, Z. Xiong, S. Yang, Y. Yang, Z. Zhao, Klaus H. Maier-Hein, Paul F. Jäger, Annette Kopp-Schneider, Lena Maier-Hein

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2023

2022

Geometry-Aware Neural Solver for Fast Bayesian Calibration of Brain Tumor Models.

Ivan Ezhov, Tudor Mot, Suprosanna Shit, Jana Lipková, Johannes C. Paetzold, Florian Kofler, Chantal Pellegrini, Marcel Kollovieh, Fernando Navarro, Hongwei Li, Marie Metz, Benedikt Wiestler, Bjoern H. Menze

IEEE Trans. Medical Imaging, 2022

Where is VALDO? VAscular Lesions Detection and segmentatiOn challenge at MICCAI 2021.

Carole H. Sudre, Kimberlin M. H. van Wijnen, Florian Dubost, Hieab Adams, David Atkinson, Frederik Barkhof, Mahlet A. Birhanu, Esther E. Bron, Robin Camarasa, Nish Chaturvedi, Yuan Chen, Zihao Chen, Shuai Chen, Qi Dou, Tavia E. Evans, Ivan Ezhov, Haojun Gao, Marta Gironés-Sangüesa, Juan Domingo Gispert, Beatriz Gomez Anson, Alun D. Hughes, Mohammad Arfan Ikram, Silvia Ingala, Hans Rolf Jäger, Florian Kofler, Hugo J. Kuijf, Denis Kutnar, Minho Lee, Bo Li, Luigi Lorenzini, Bjoern H. Menze, José Luis Molinuevo, Yiwei Pan, Élodie Puybareau, Rafael Rehwald, Ruisheng Su, Pengcheng Shi, Lorna Smith, Therese Tillin, Guillaume Tochon, Hélène Urien, Bas H. M. van der Velden, Isabelle F. van der Velpen, Benedikt Wiestler, Frank J. Wolters, Pinar Yilmaz, Marius de Groot, Meike W. Vernooij, Marleen de Bruijne

CoRR, 2022

ISLES 2022: A multi-center magnetic resonance imaging stroke lesion segmentation dataset.

Moritz Roman Hernandez Petzsche, Ezequiel de la Rosa, Uta Hanning, Roland Wiest, Waldo Enrique Valenzuela Pinilla, Mauricio Reyes, Maria Inês Meyer, Sook-Lei Liew, Florian Kofler, Ivan Ezhov, David Robben, Alexandre Hutton, Tassilo Friedrich, Teresa Zarth, Johannes Bürkle, The Anh Baran, Bjoern H. Menze, Gabriel Broocks, Lukas Meyer, Claus Zimmer, Tobias Boeckh-Behrens, Maria Berndt, Benno Ikenberg, Benedikt Wiestler, Jan S. Kirschke

CoRR, 2022

Casting the inverse problem as a database query. The case of personalized tumor growth modeling.

Ivan Ezhov, Marcel Rosier, Lucas Zimmer, Florian Kofler, Suprosanna Shit, Johannes C. Paetzold, Kevin Scibilia, Leon Mächler, Katharina Franitza, Tamaz Amiranashvili, Marie Metz, Sailesh Conjeti, Benedikt Wiestler, Bjoern H. Menze

CoRR, 2022

A for-loop is all you need. For solving the inverse problem in the case of personalized tumor growth modeling.

Ivan Ezhov, Marcel Rosier, Lucas Zimmer, Florian Kofler, Suprosanna Shit, Johannes C. Paetzold, Kevin Scibilia, Felix Steinbauer, Leon Mächler, Katharina Franitza, Tamaz Amiranashvili, Martin J. Menten, Marie Metz, Sailesh Conjeti, Benedikt Wiestler, Bjoern H. Menze

Proceedings of the Machine Learning for Health, 2022

Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings.

Florian Kofler, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Ezequiel de la Rosa, John LaMaster, Hongwei Li, Tom Finck, Suprosanna Shit, Johannes C. Paetzold, Spyridon Bakas, Marie Piraud, Jan Kirschke, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze

Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2022

2021

FedCostWAvg: A new averaging for better Federated Learning.

Leon Mächler, Ivan Ezhov, Florian Kofler, Suprosanna Shit, Johannes C. Paetzold, Timo Loehr, Benedikt Wiestler, Bjoern H. Menze

CoRR, 2021

Semi-Implicit Neural Solver for Time-dependent Partial Differential Equations.

Suprosanna Shit, Ivan Ezhov, Leon Mächler, Abinav R., Jana Lipková, Johannes C. Paetzold, Florian Kofler, Marie Piraud, Bjoern H. Menze

CoRR, 2021

Are we using appropriate segmentation metrics? Identifying correlates of human expert perception for CNN training beyond rolling the DICE coefficient.

Florian Kofler, Ivan Ezhov, Fabian Isensee, Fabian Balsiger, Christoph Berger, Maximilian Koerner, Johannes C. Paetzold, Hongwei Li, Suprosanna Shit, Richard McKinley, Spyridon Bakas, Claus Zimmer, Donna P. Ankerst, Jan Kirschke, Benedikt Wiestler, Bjoern H. Menze

CoRR, 2021

FedCostWAvg: A New Averaging for Better Federated Learning.

Leon Mächler, Ivan Ezhov, Florian Kofler, Suprosanna Shit, Johannes C. Paetzold, Timo Loehr, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze

Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2021

2020

Real-time Bayesian personalization via a learnable brain tumor growth model.

Ivan Ezhov, Tudor Mot, Suprosanna Shit, Jana Lipková, Johannes C. Paetzold, Florian Kofler, Fernando Navarro, Marie Metz, Benedikt Wiestler, Björn H. Menze

CoRR, 2020

Red-GAN: Attacking class imbalance via conditioned generation. Yet another medical imaging perspective.

Ahmad B. Qasim, Ivan Ezhov, Suprosanna Shit, Oliver Schoppe, Johannes C. Paetzold, Anjany Sekuboyina, Florian Kofler, Jana Lipková, Hongwei Li, Bjoern H. Menze

Proceedings of the International Conference on Medical Imaging with Deep Learning, 2020

Reliable Saliency Maps for Weakly-Supervised Localization of Disease Patterns.

Maximilian Möller, Matthias Kohl, Stefan Braunewell, Florian Kofler, Benedikt Wiestler, Jan S. Kirschke, Björn H. Menze, Marie Piraud

Proceedings of the Interpretable and Annotation-Efficient Learning for Medical Image Computing, 2020

A Distance-Based Loss for Smooth and Continuous Skin Layer Segmentation in Optoacoustic Images.

Stefan Gerl, Johannes C. Paetzold, Hailong He, Ivan Ezhov, Suprosanna Shit, Florian Kofler, Amirhossein Bayat, Giles Tetteh, Vasilis Ntziachristos, Bjoern H. Menze

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

2019

DiamondGAN: Unified Multi-modal Generative Adversarial Networks for MRI Sequences Synthesis.

Hongwei Li, Johannes C. Paetzold, Anjany Sekuboyina, Florian Kofler, Jianguo Zhang, Jan S. Kirschke, Benedikt Wiestler, Bjoern H. Menze

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Neural Parameters Estimation for Brain Tumor Growth Modeling.

Ivan Ezhov, Jana Lipková, Suprosanna Shit, Florian Kofler, Nora Collomb, Benjamin Lemasson, Emmanuel Luc Barbier, Bjoern H. Menze

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

A Baseline for Predicting Glioblastoma Patient Survival Time with Classical Statistical Models and Primitive Features Ignoring Image Information.

Florian Kofler, Johannes C. Paetzold, Ivan Ezhov, Suprosanna Shit, Daniel Krahulec, Jan S. Kirschke, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze

Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2019