Edward C. Holmes

According to our database, Edward C. Holmes authored at least 12 papers between 1996 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

Artificial intelligence for modelling infectious disease epidemics.

Moritz U. G. Kraemer, Joseph L.-H. Tsui, Serina Chang, Spyros Lytras, Mark P. Khurana, Samantha Vanderslott, Sumali Bajaj, Neil Scheidwasser, Jacob Liam Curran-Sebastian, Elizaveta Semenova, Mengyan Zhang, H. Juliette T. Unwin, Oliver J. Watson, Cathal Mills, Abhishek Dasgupta, Luca Ferretti, Samuel V. Scarpino, Etien Koua, Oliver Morgan, Houriiyah Tegally, Ulrich Paquet, Loukas Moutsianas, Christophe Fraser, Neil M. Ferguson, Eric J. Topol, David A. Duchêne, Tanja Stadler, Patricia Kingori, Michael J. Parker, Francesca Dominici, Nigel Shadbolt, Marc A. Suchard, Oliver Ratmann, Seth R. Flaxman, Edward C. Holmes, Manuel Gomez-Rodriguez, Bernhard Schölkopf, Christl A. Donnelly, Oliver G. Pybus, Simon Cauchemez, Samir Bhatt

Nat., February, 2025

SegFinder: an automated tool for identifying complete RNA virus genome segments through co-occurrence in multiple sequenced samples.

Xue Liu, Jianbin Kong, Yongtao Shan, Ziyue Yang, Jiafan Miao, Yuanfei Pan, Tianyang Luo, Zhiyuan Shi, Yingmei Wang, Qinyu Gou, Chunhui Yang, Hanzong Li, Chunmei Li, Shaochuan Li, Xu Zhang, Yanni Sun, Edward C. Holmes, Deyin Guo, Mang Shi

Briefings Bioinform., 2025

2021

Collecting and managing taxonomic data with NCBI-taxonomist.

Jan P. Buchmann, Edward C. Holmes

Bioinform., 2021

Bioinformatics resources for SARS-CoV-2 discovery and surveillance.

Tao Hu, Juan Li, Hong Zhou, Cixiu Li, Edward C. Holmes, Weifeng Shi

Briefings Bioinform., 2021

2019

Entrezpy: a Python library to dynamically interact with the NCBI Entrez databases.

Jan P. Buchmann, Edward C. Holmes

Bioinform., 2019

2017

Establishment and cryptic transmission of Zika virus in Brazil and the Americas.

Nuno R. Faria, Joshua Quick, I. M. Claro, Julien Thézé, J. G. de Jesus, Marta Giovanetti, Moritz U. G. Kraemer, S. C. Hill, Allison Black, A. C. Da Costa, L. C. Franco, S. P. Silva, Chieh-Hsi Wu, Jayna Raghwani, Simon Cauchemez, Louis du Plessis, M. P. Verotti, W. K. de Oliveira, E. H. Carmo, G. E. Coelho, A. C. F. S. Santelli, L. C. Vinhal, C. M. Henriques, J. T. Simpson, Matthew Loose, Kristian G. Andersen, N. D. Grubaugh, S. Somasekar, C. Y. Chiu, J. E. Muñoz-Medina, C. R. Gonzalez-Bonilla, Carolina Fócil Arias, L. L. Lewis-Ximenez, S. A. Baylis, A. O. Chieppe, S. F. Aguiar, C. A. Fernandes, P. S. Lemos, B. L. S. Nascimento, H. A. O. Monteiro, I. C. Siqueira, M. G. de Queiroz, T. R. de Souza, J. F. Bezerra, M. R. Lemos, G. F. Pereira, D. Loudal, L. C. Moura, R. Dhalia, R. F. França, T. Magalhães, E. T. Marques Jr, Thomas Jaenisch, Gabriel da Luz Wallau, M. C. de Lima, V. Nascimento, E. M. de Cerqueira, M. M. de Lima, D. L. Mascarenhas, J. P. Moura Neto, A. S. Levin, T. R. Tozetto-Mendoza, S. N. Fonseca, M. C. Mendes-Correa, F. P. Milagres, Aluisio Segurado, Edward C. Holmes, Andrew Rambaut, Trevor Bedford, M. R. T. Nunes, Ester C. Sabino, Luis Carlos Alcantara, Nicholas J. Loman, Oliver G. Pybus

Nat., 2017

Virus genomes reveal factors that spread and sustained the Ebola epidemic.

Gytis Dudas, Luiz Max Carvalho, Trevor Bedford, Andrew J. Tatem, Guy Baele, Nuno R. Faria, Daniel J. Park, Jason T. Ladner, Armando Arias, Danny Asogun, Filip Bielejec, Sarah L. Caddy, Matthew Cotten, Jonathan D'Ambrozio, Simon Dellicour, Antonino Di Caro, Joseph W. Diclaro, Sophie Duraffour, Michael J. Elmore, Lawrence S. Fakoli, Ousmane Faye, Merle L. Gilbert, Sahr M. Gevao, Stephen Gire, Adrianne Gladden-Young, Andreas Gnirke, Augustine Goba, Donald S. Grant, Bart L. Haagmans, Julian A. Hiscox, Umaru Jah, Jeffrey R. Kugelman, Di Liu, Jia Lu, Christine M. Malboeuf, Suzanne Mate, David A. Matthews, Christian B. Matranga, Luke W. Meredith, James Qu, Joshua Quick, Suzan D. Pas, My V. T. Phan, Georgios Pollakis, Chantal B. Reusken, Mariano Sanchez-Lockhart, Stephen F. Schaffner, John S. Schieffelin, Rachel S. G. Sealfon, Etienne Simon-Loriere, Saskia L. Smits, Kilian Stoecker, Lucy Thorne, Ekaete Alice Tobin, Mohamed A. Vandi, Simon J. Watson, Kendra West, Shannon Whitmer, Michael R. Wiley, Sarah M. Winnicki, Shirlee Wohl, Roman Wölfel, Nathan L. Yozwiak, Kristian G. Andersen, Sylvia O. Blyden, Fatorma Bolay, Miles W. Carroll, Bernice Dahn, Boubacar Diallo, Pierre Formenty, Christophe Fraser, George F. Gao, Robert F. Garry, Ian Goodfellow, Stephan Günther, Christian T. Happi, Edward C. Holmes, Brima Kargbo, Sakoba Keïta, Paul Kellam, Marion Koopmans, Jens H. Kuhn, Nicholas J. Loman, N'Faly Magassouba, Dhamari Naidoo, Stuart T. Nichol, Tolbert Nyenswah, Gustavo F. Palacios, Oliver G. Pybus, Pardis C. Sabeti, Amadou Sall, Ute Ströher, Isatta Wurie, Marc A. Suchard, Philippe Lemey, Andrew Rambaut

Nat., 2017

Sorting permutations: Games, genomes, and cycles.

Katharine L. M. Adamyk, Edward C. Holmes, G. R. Mayfield, Dennis J. Moritz, Marion Scheepers, Bridget Eileen Tenner, Helen C. Wauck

Discret. Math. Algorithms Appl., 2017

2016

Estimating evolutionary rates using time-structured data: a general comparison of phylogenetic methods.

Sebastián Duchêne, Jemma L. Geoghegan, Edward C. Holmes, Simon Y. W. Ho

Bioinform., 2016

2009

Discovering the Phylodynamics of RNA Viruses.

Edward C. Holmes, Bryan T. Grenfell

PLoS Comput. Biol., 2009

1998

SWAN: sliding window analysis of nucleotide sequence variability.

V. Proutski, Edward C. Holmes

Bioinform., 1998

1996

Primer Master: a new program for the design and analysis of PCR primers.

V. Proutski, Edward C. Holmes

Comput. Appl. Biosci., 1996