Guy Baele

According to our database, Guy Baele authored at least 17 papers between 2009 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2025

Harnessing tensor cores for greater computational efficiency and lower energy usage in phylogenetic inference.

Karthik Gangavarapu, Xiang Ji, Yucai Shao, Andrew Rambaut, Philippe Lemey, Guy Baele, Marc A. Suchard

Dataset, June, 2025

HIPSTR: highest independent posterior subtree reconstruction in TreeAnnotator X.

Guy Baele, Luiz Max Carvalho, Marius Brusselmans, Gytis Dudas, Xiang Ji, John T. McCrone, Philippe Lemey, Marc A. Suchard, Andrew Rambaut

Bioinform., 2025

2024

Many-core algorithms for high-dimensional gradients on phylogenetic trees.

Karthik Gangavarapu, Xiang Ji, Guy Baele, Mathieu Fourment, Philippe Lemey, Frederick A. Matsen IV, Marc A. Suchard

Bioinform., February, 2024

spread.gl: visualizing pathogen dispersal in a high-performance browser application.

Yimin Li, Nena Bollen, Samuel L. Hong, Marius Brusselmans, Fabiana Gambaro, Joon Klaps, Marc A. Suchard, Andrew Rambaut, Philippe Lemey, Simon Dellicour, Guy Baele

Bioinform., 2024

2021

Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk.

Antanas Kalkauskas, Umberto Perron, Yuxuan Sun, Nick Goldman, Guy Baele, Stéphane Guindon, Nicola De Maio

PLoS Comput. Biol., 2021

Massive Parallelization Boosts Big Bayesian Multidimensional Scaling.

Andrew J. Holbrook, Philippe Lemey, Guy Baele, Simon Dellicour, Dirk Brockmann, Andrew Rambaut, Marc A. Suchard

J. Comput. Graph. Stat., 2021

2020

Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference - Application to H5N1 spread in the Mekong region.

Simon Dellicour, Philippe Lemey, Jean Artois, Tommy T. Lam, Alice Fusaro, Isabella Monne, Giovanni Cattoli, Dmitry Kuznetsov, Ioannis Xenarios, Gwenaelle Dauphin, Wantanee Kalpravidh, Sophie von Dobschütz, Filip Claes, Scott H. Newman, Marc A. Suchard, Guy Baele, Marius Gilbert

Bioinform., 2020

2017

Virus genomes reveal factors that spread and sustained the Ebola epidemic.

Gytis Dudas, Luiz Max Carvalho, Trevor Bedford, Andrew J. Tatem, Guy Baele, Nuno R. Faria, Daniel J. Park, Jason T. Ladner, Armando Arias, Danny Asogun, Filip Bielejec, Sarah L. Caddy, Matthew Cotten, Jonathan D'Ambrozio, Simon Dellicour, Antonino Di Caro, Joseph W. Diclaro, Sophie Duraffour, Michael J. Elmore, Lawrence S. Fakoli, Ousmane Faye, Merle L. Gilbert, Sahr M. Gevao, Stephen Gire, Adrianne Gladden-Young, Andreas Gnirke, Augustine Goba, Donald S. Grant, Bart L. Haagmans, Julian A. Hiscox, Umaru Jah, Jeffrey R. Kugelman, Di Liu, Jia Lu, Christine M. Malboeuf, Suzanne Mate, David A. Matthews, Christian B. Matranga, Luke W. Meredith, James Qu, Joshua Quick, Suzan D. Pas, My V. T. Phan, Georgios Pollakis, Chantal B. Reusken, Mariano Sanchez-Lockhart, Stephen F. Schaffner, John S. Schieffelin, Rachel S. G. Sealfon, Etienne Simon-Loriere, Saskia L. Smits, Kilian Stoecker, Lucy Thorne, Ekaete Alice Tobin, Mohamed A. Vandi, Simon J. Watson, Kendra West, Shannon Whitmer, Michael R. Wiley, Sarah M. Winnicki, Shirlee Wohl, Roman Wölfel, Nathan L. Yozwiak, Kristian G. Andersen, Sylvia O. Blyden, Fatorma Bolay, Miles W. Carroll, Bernice Dahn, Boubacar Diallo, Pierre Formenty, Christophe Fraser, George F. Gao, Robert F. Garry, Ian Goodfellow, Stephan Günther, Christian T. Happi, Edward C. Holmes, Brima Kargbo, Sakoba Keïta, Paul Kellam, Marion Koopmans, Jens H. Kuhn, Nicholas J. Loman, N'Faly Magassouba, Dhamari Naidoo, Stuart T. Nichol, Tolbert Nyenswah, Gustavo F. Palacios, Oliver G. Pybus, Pardis C. Sabeti, Amadou Sall, Ute Ströher, Isatta Wurie, Marc A. Suchard, Philippe Lemey, Andrew Rambaut

Nat., 2017

PhyloGeoTool: interactively exploring large phylogenies in an epidemiological context.

Pieter Libin, Ewout Vanden Eynden, Francesca Incardona, Ann Nowé, Antonia Bezenchek, EucoHIV Study Group, Anders Sönnerborg, Anne-Mieke Vandamme, Kristof Theys, Guy Baele

Bioinform., 2017

Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST.

Guy Baele, Philippe Lemey, Andrew Rambaut, Marc A. Suchard

Bioinform., 2017

2014

The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates.

Bram Vrancken, Andrew Rambaut, Marc A. Suchard, Alexei J. Drummond, Guy Baele, Inge Derdelinckx, Eric Van Wijngaerden, Anne-Mieke Vandamme, Kristel Van Laethem, Philippe Lemey

PLoS Comput. Biol., 2014

πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios.

Filip Bielejec, Philippe Lemey, Luiz Carvalho, Guy Baele, Andrew Rambaut, Marc A. Suchard

BMC Bioinform., 2014

2013

Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution.

Guy Baele, Philippe Lemey, Stijn Vansteelandt

BMC Bioinform., 2013

Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency.

Guy Baele, Philippe Lemey

Bioinform., 2013

Reconstruction of an HIV Transmission History in a Bayesian Coalescent Framework.

Bram Vrancken, Andrew Rambaut, Guy Baele, Anne-Mieke Vandamme, Kristel Van Laethem, Eric Van Wijngaerden, Alexei J. Drummond, Marc A. Suchard, Philippe Lemey

Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2013

2011

A bio-inspired agent-based system for controlling robot behaviour.

Yao Yao, Guy Baele, Yves Van de Peer

Proceedings of the 2011 IEEE Symposium on Intelligent Agent, 2011

2009

Open-ended on-board Evolutionary Robotics for robot swarms.

Guy Baele, Nicolas Bredèche, Evert Haasdijk, Steven Maere, Nico K. Michiels, Yves Van de Peer, Thomas Schmickl, Christopher S. F. Schwarzer, Ronald Thenius

Proceedings of the IEEE Congress on Evolutionary Computation, 2009