Fabien Jourdan

According to our database, Fabien Jourdan authored at least 35 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Genome scale metabolic network modelling for metabolic profile predictions.

Juliette Cooke, Maxime Delmas, Cecilia Wieder, Pablo Rodríguez-Mier, Clément Frainay, Florence Vinson, Timothy M. D. Ebbels, Nathalie Poupin, Fabien Jourdan

PLoS Comput. Biol., February, 2024

PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration.

Cecilia Wieder, Juliette Cooke, Clément Frainay, Nathalie Poupin, Russell Bowler, Fabien Jourdan, Katerina J. Kechris, Rachel P. J. Lai, Timothy M. D. Ebbels

PLoS Comput. Biol., 2024

2023

A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques.

Louison Fresnais, Olivier Périn, Anne Riu, Romain Grall, Alban Ott, Bernard Fromenty, Jean-Clément Gallardo, Maximilian Stingl, Clément Frainay, Fabien Jourdan, Nathalie Poupin

BMC Bioinform., December, 2023

2021

Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis.

Cecilia Wieder, Clément Frainay, Nathalie Poupin, Pablo Rodríguez-Mier, Florence Vinson, Juliette Cooke, Rachel P. J. Lai, Jacob G. Bundy, Fabien Jourdan, Timothy M. D. Ebbels

PLoS Comput. Biol., 2021

DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks.

Pablo Rodríguez-Mier, Nathalie Poupin, Carlo de Blasio, Laurent Le Cam, Fabien Jourdan

PLoS Comput. Biol., 2021

FORUM: building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.

Maxime Delmas, Olivier Filangi, Nils Paulhe, Florence Vinson, Christophe Duperier, William Garrier, Paul-Emeric Saunier, Yoann Pitarch, Fabien Jourdan, Franck Giacomoni, Clément Frainay

Bioinform., 2021

2019

MetaboRank: network-based recommendation system to interpret and enrich metabolomics results.

Clément Frainay, Sandrine Aros, Maxime Chazalviel, Thomas Garcia, Florence Vinson, Nicolas Weiss, Benoit Colsch, Frédéric Sedel, Dominique Thabut, Christophe Junot, Fabien Jourdan

Bioinform., 2019

2018

MetExplore: collaborative edition and exploration of metabolic networks.

Ludovic Cottret, Clément Frainay, Maxime Chazalviel, Floréal Cabanettes, Yoann Gloaguen, Etienne Camenen, Benjamin Merlet, Stéphanie Heux, Jean-Charles Portais, Nathalie Poupin, Florence Vinson, Fabien Jourdan

Nucleic Acids Res., 2018

MetExploreViz: web component for interactive metabolic network visualization.

Maxime Chazalviel, Clément Frainay, Nathalie Poupin, Florence Vinson, Benjamin Merlet, Yoann Gloaguen, Ludovic Cottret, Fabien Jourdan

Bioinform., 2018

2017

The future of metabolomics in ELIXIR.

Merlijn N. van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez Del Angel, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Jose L. Izquierdo-García, Rafael C. Jiménez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Nicholas K. Moschonas, Steffen Neumann, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata P. Satagopam, Daniel Schober, Ruth Shimmo, Rachel A. Spicer, Ola Spjuth, Etienne A. Thévenot, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen, Gianluigi Zanetti, Christoph Steinbeck

F1000Research, 2017

Computational methods to identify metabolic sub-networks based on metabolomic profiles.

Clément Frainay, Fabien Jourdan

Briefings Bioinform., 2017

2015

TrypanoCyc: a community-led biochemical pathways database for <i>Trypanosoma brucei</i>.

Sanu Shameer, Flora J. Logan-Klumpler, Florence Vinson, Ludovic Cottret, Benjamin Merlet, Fiona Achcar, Michael Boshart, Matthew Berriman, Rainer Breitling, Frédéric Bringaud, Peter Bütikofer, Amy M. Cattanach, Bridget Bannerman-Chukualim, Darren J. Creek, Kathryn Crouch, Harry P. de Koning, Hubert Denise, Charles Ebikeme, Alan H. Fairlamb, Michael A. J. Ferguson, Michael L. Ginger, Christiane Hertz-Fowler, Eduard J. Kerkhoven, Pascal Mäser, Paul A. M. Michels, Archana Nayak, David W. Nes, Derek P. Nolan, Christian Olsen, Fatima Silva-Franco, Terry K. Smith, Martin C. Taylor, Aloysius G. M. Tielens, Michael D. Urbaniak, Jaap J. van Hellemond, Isabel M. Vincent, Shane R. Wilkinson, Susan Wyllie, Fred R. Opperdoes, Michael P. Barrett, Fabien Jourdan

Nucleic Acids Res., 2015

2014

ProbMetab: an <i>R</i> package for Bayesian probabilistic annotation of LC-MS-based metabolomics.

Ricardo Roberto da Silva, Fabien Jourdan, Diego M. Salvanha, Fabien Létisse, Emilien L. Jamin, Simone Guidetti-Gonzalez, Carlos A. Labate, Ricardo Z. N. Vêncio

Bioinform., 2014

Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure.

Paulo Vieira Milreu, Cecilia Coimbra Klein, Ludovic Cottret, Vicente Acuña, Etienne Birmelé, Michele Borassi, Christophe Junot, Alberto Marchetti-Spaccamela, Andrea Marino, Leen Stougie, Fabien Jourdan, Pierluigi Crescenzi, Vincent Lacroix, Marie-France Sagot

Bioinform., 2014

2012

Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets.

Vicente Acuña, Etienne Birmelé, Ludovic Cottret, Pierluigi Crescenzi, Fabien Jourdan, Vincent Lacroix, Alberto Marchetti-Spaccamela, Andrea Marino, Paulo Vieira Milreu, Marie-France Sagot, Leen Stougie

Theor. Comput. Sci., 2012

Flux Analysis of the <i>Trypanosoma brucei</i> Glycolysis Based on a Multiobjective-Criteria Bioinformatic Approach.

Amine Ghozlane, Frédéric Bringaud, Hayssam Soueidan, Isabelle Dutour, Fabien Jourdan, Patricia Thébault

Adv. Bioinformatics, 2012

Systrip: A Visual Environment for the Investigation of Time-series Data in the Context of Metabolic Networks.

Jonathan Dubois, Ludovic Cottret, Amine Ghozlane, David Auber, Frédéric Bringaud, Patricia Thébault, Fabien Jourdan, Romain Bourqui

Proceedings of the 16th International Conference on Information Visualisation, 2012

2011

Communities and hierarchical structures in dynamic social networks: analysis and visualization.

Frédéric Gilbert, Paolo Simonetto, Faraz Zaidi, Fabien Jourdan, Romain Bourqui

Soc. Netw. Anal. Min., 2011

Domain specific vs Generic Network Visualization: an Evaluation with Metabolic Networks.

Romain Bourqui, Helen C. Purchase, Fabien Jourdan

Proceedings of the Twelfth Australasian User Interface Conference, 2011

2010

MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks.

Ludovic Cottret, David Wildridge, Florence Vinson, Michael P. Barrett, Hubert Charles, Marie-France Sagot, Fabien Jourdan

Nucleic Acids Res., 2010

2009

Un algorithme stable de décomposition pour l'analyse des réseaux sociaux dynamiques.

Romain Bourqui, Paolo Simonetto, Fabien Jourdan

Proceedings of the Extraction et gestion des connaissances (EGC'2009), 2009

A Stable Decomposition Algorithm for Dynamic Social Network Analysis.

Romain Bourqui, Paolo Simonetto, Fabien Jourdan

Proceedings of the Advances in Knowledge Discovery and Management [Best of EGC 2009, 2009

Detecting Structural Changes and Command Hierarchies in Dynamic Social Networks.

Romain Bourqui, Frédéric Gilbert, Paolo Simonetto, Faraz Zaidi, Umang Sharan, Fabien Jourdan

Proceedings of the 2009 International Conference on Advances in Social Network Analysis and Mining, 2009

2008

MetaNetter: inference and visualization of high-resolution metabolomic networks.

Fabien Jourdan, Rainer Breitling, Michael P. Barrett, David R. Gilbert

Bioinform., 2008

Revealing Subnetwork Roles using Contextual Visualization: Comparison of Metabolic Networks.

Romain Bourqui, Fabien Jourdan

Proceedings of the 12th International Conference on Information Visualisation, 2008

2007

Metabolic network visualization eliminating node redundance and preserving metabolic pathways.

Romain Bourqui, Ludovic Cottret, Vincent Lacroix, David Auber, Patrick Mary, Marie-France Sagot, Fabien Jourdan

BMC Syst. Biol., 2007

2006

Multiscale Scatterplot Matrix for Visual and Interactive Exploration of Metabonomic Data.

Fabien Jourdan, Alain Paris, Pierre-Yves Koenig, Guy Melançon

Proceedings of the Pixelization Paradigm, First Visual Information Expert Workshop, 2006

Metabolic network visualization using constraint planar graph drawing algorithm.

Romain Bourqui, David Auber, Vincent Lacroix, Fabien Jourdan

Proceedings of the 10th International Conference on Information Visualisation, 2006

2005

Interactive Refinement of Multi-scale Network Clusterings.

David Auber, Fabien Jourdan

Proceedings of the 9th International Conference on Information Visualisation, 2005

Une approche MDS hybride pour l'exploration visuelle interactive.

Fabien Jourdan, Guy Melançon, Christophe Douy, Alexandre Gasne

Proceedings of the 17th international conference on Francophone sur l'Interaction Homme-Machine, 2005

2004

Multiscale hybrid MDS.

Fabien Jourdan, Guy Melançon

Proceedings of the 8th International Conference on Information Visualisation, 2004

Metric-Based Network Exploration and Multiscale Scatterplot.

Yves Chiricota, Fabien Jourdan, Guy Melançon

Proceedings of the 10th IEEE Symposium on Information Visualization (InfoVis 2004), 2004

2003

Tool for metabolic and regulatory pathways visual analysis.

Fabien Jourdan, Guy Melançon

Proceedings of the Visualization and Data Analysis 2003, 2003

Software Components Capture Using Graph Clustering.

Yves Chiricota, Fabien Jourdan, Guy Melançon

Proceedings of the 11th International Workshop on Program Comprehension (IWPC 2003), 2003

Multiscale Visualization of Small World Networks.

David Auber, Yves Chiricota, Fabien Jourdan, Guy Melançon

Proceedings of the 9th IEEE Symposium on Information Visualization (InfoVis 2003), 2003