Antonio Rosato

According to our database, Antonio Rosato authored at least 25 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Hunting down zinc(II)-binding sites in proteins with distance matrices.

Vincenzo Laveglia, Milana Bazayeva, Claudia Andreini, Antonio Rosato

Bioinform., October, 2023

2022

PDBe-KB: collaboratively defining the biological context of structural data.

Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar

Nucleic Acids Res., 2022

Dutch vs. first-price auctions with expectations-based loss-averse bidders.

Benjamin Balzer, Antonio Rosato, Jonas von Wangenheim

J. Econ. Theory, 2022

Learning to Identify Physiological and Adventitious Metal-Binding Sites in the Three-Dimensional Structures of Proteins by Following the Hints of a Deep Neural Network.

Vincenzo Laveglia, Andrea Giachetti, Davide Sala, Claudia Andreini, Antonio Rosato

J. Chem. Inf. Model., 2022

2021

Expectations-Based Loss Aversion in Auctions with Interdependent Values: Extensive vs. Intensive Risk.

Benjamin Balzer, Antonio Rosato

Manag. Sci., 2021

Insights into the Dynamics of the Human Zinc Transporter ZnT8 by MD Simulations.

Davide Sala, Andrea Giachetti, Antonio Rosato

J. Chem. Inf. Model., 2021

Automated Determination of Nuclear Magnetic Resonance Chemical Shift Perturbations in Ligand Screening Experiments: The PICASSO Web Server.

Vincenzo Laveglia, Andrea Giachetti, Linda Cerofolini, Kevin Haubrich, Marco Fragai, Alessio Ciulli, Antonio Rosato

J. Chem. Inf. Model., 2021

Structural biology in the clouds: The WeNMR-EOSC Ecosystem.

Rodrigo Vargas Honorato, Panagiotis I. Koukos, Brian Jiménez-García, Andrei Tsaregorodtsev, Marco Verlato, Andrea Giachetti, Antonio Rosato, Alexandre M. J. J. Bonvin

CoRR, 2021

2019

Upgrading and Validation of the AMBER Force Field for Histidine and Cysteine Zinc(II)-Binding Residues in Sites with Four Protein Ligands.

Marina Macchiagodena, Marco Pagliai, Claudia Andreini, Antonio Rosato, Piero Procacci

J. Chem. Inf. Model., 2019

Loss aversion and competition in Vickrey auctions: Money ain't no good.

Antonio Rosato, Agnieszka Tymula

Games Econ. Behav., 2019

2018

MetalPDB in 2018: a database of metal sites in biological macromolecular structures.

Valeria Putignano, Antonio Rosato, Lucia Banci, Claudia Andreini

Nucleic Acids Res., 2018

2017

Investigation of the Iron(II) Release Mechanism of Human H-Ferritin as a Function of pH.

Davide Sala, Silvia Ciambellotti, Andrea Giachetti, Paola Turano, Antonio Rosato

J. Chem. Inf. Model., September, 2017

The future of metabolomics in ELIXIR.

Merlijn N. van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez Del Angel, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Jose L. Izquierdo-García, Rafael C. Jiménez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Nicholas K. Moschonas, Steffen Neumann, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata P. Satagopam, Daniel Schober, Ruth Shimmo, Rachel A. Spicer, Ola Spjuth, Etienne A. Thévenot, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen, Gianluigi Zanetti, Christoph Steinbeck

F1000Research, 2017

2016

MetalPredator: a web server to predict iron-sulfur cluster binding proteomes.

Yana Valasatava, Antonio Rosato, Lucia Banci, Claudia Andreini

Bioinform., 2016

2013

MetalPDB: a database of metal sites in biological macromolecular structures.

Claudia Andreini, Gabriele Cavallaro, Serena Lorenzini, Antonio Rosato

Nucleic Acids Res., 2013

MetalS²: A Tool for the Structural Alignment of Minimal Functional Sites in Metal-Binding Proteins and Nucleic Acids.

Claudia Andreini, Gabriele Cavallaro, Antonio Rosato, Yana Valasatava

J. Chem. Inf. Model., 2013

2012

RPF: a quality assessment tool for protein NMR structures.

Yuanpeng Janet Huang, Antonio Rosato, Gautam Singh, Gaetano T. Montelione

Nucleic Acids Res., 2012

WeNMR: Structural Biology on the Grid.

Tsjerk A. Wassenaar, Marc van Dijk, Nuno Loureiro-Ferreira, Gijs van der Schot, Sjoerd Jacob de Vries, Christophe Schmitz, Johan van der Zwan, Rolf Boelens, Andrea Giachetti, Lucio Ferella, Antonio Rosato, Ivano Bertini, Torsten Herrmann, Hendrik R. A. Jonker, Anurag Bagaria, Victor Jaravine, Peter Güntert, Harald Schwalbe, Wim F. Vranken, Jurgen F. Doreleijers, Gert Vriend, Geerten W. Vuister, Daniel Franke, Alexey Kikhney, Dmitri I. Svergun, Rasmus H. Fogh, John M. C. Ionides, Ernest D. Laue, Chris A. E. M. Spronk, Simonas Jurksa, Marco Verlato, Simone Badoer, Stefano Dal Pra, Mirco Mazzucato, Eric Frizziero, Alexandre M. J. J. Bonvin

J. Grid Comput., 2012

2011

A Simple Protocol for the Comparative Analysis of the Structure and Occurrence of Biochemical Pathways Across Superkingdoms.

Claudia Andreini, Ivano Bertini, Gabriele Cavallaro, Leonardo Decaria, Antonio Rosato

J. Chem. Inf. Model., 2011

A Grid-enabled web portal for NMR structure refinement with AMBER.

Ivano Bertini, David A. Case, Lucio Ferella, Andrea Giachetti, Antonio Rosato

Bioinform., 2011

WeNMR: Structural Biology on the Grid.

Tsjerk A. Wassenaar, Marc van Dijk, Nuno Loureiro-Ferreira, Gijs van der Schot, Sjoerd Jacob de Vries, Christophe Schmitz, Johan van der Zwan, Rolf Boelens, Andrea Giachetti, Lucio Ferella, Antonio Rosato, Ivano Bertini, Torsten Herrmann, Hendrik R. A. Jonker, Anurag Bagaria, Victor Jaravine, Peter Güntert, Harald Schwalbe, Wim F. Vranken, Jurgen F. Doreleijers, Gert Vriend, Geerten W. Vuister, Daniel Franke, Alexey Kikhney, Dmitri I. Svergun, Rasmus H. Fogh, John M. C. Ionides, Ernest D. Laue, Chris A. E. M. Spronk, Marco Verlato, Simone Badoer, Stefano Dal Pra, Mirco Mazzucato, Eric Frizziero, Alexandre M. J. J. Bonvin

Proceedings of the 3rd International Workshop on Science Gateways for Life Sciences, 2011

2009

Role of the N-Terminal Tail of Metal-Transporting P_1B-type ATPases from Genome-Wide Analysis and Molecular Dynamics Simulations.

Shailesh Sharma, Antonio Rosato

J. Chem. Inf. Model., 2009

2007

Predicting zinc binding at the proteome level.

Andrea Passerini, Claudia Andreini, Sauro Menchetti, Antonio Rosato, Paolo Frasconi

BMC Bioinform., 2007

2006

Improving Prediction of Zinc Binding Sites by Modeling the Linkage Between Residues Close in Sequence.

Sauro Menchetti, Andrea Passerini, Paolo Frasconi, Claudia Andreini, Antonio Rosato

Proceedings of the Research in Computational Molecular Biology, 2006

2004

A hint to search for metalloproteins in gene banks.

Claudia Andreini, Ivano Bertini, Antonio Rosato

Bioinform., 2004