Frédéric Cazals

Orcid: 0000-0003-2735-6755

According to our database1, Frédéric Cazals authored at least 54 papers between 1995 and 2023.

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Bibliography

2023
Enhanced conformational exploration of protein loops using a global parameterization of the backbone geometry.
J. Comput. Chem., 2023

Geometric constraints within tripeptides and the existence of tripeptide reconstructions.
J. Comput. Chem., 2023

2022
Improved polytope volume calculations based on Hamiltonian Monte Carlo with boundary reflections and sweet arithmetics.
J. Comput. Geom., 2022

Efficient computation of the the volume of a polytope in high-dimensions using Piecewise Deterministic Markov Processes.
Proceedings of the International Conference on Artificial Intelligence and Statistics, 2022

2021
Fréchet Mean and p-Mean on the Unit Circle: Decidability, Algorithm, and Applications to Clustering on the Flat Torus.
Proceedings of the 19th International Symposium on Experimental Algorithms, 2021

2020
Wang-Landau algorithm: An adapted random walk to boost convergence.
J. Comput. Phys., 2020

2019
Comparing Two Clusterings Using Matchings between Clusters of Clusters.
ACM J. Exp. Algorithmics, 2019

kd-switch: A Universal Online Predictor with an application to Sequential Two-Sample Testing.
CoRR, 2019

Low-Complexity Nonparametric Bayesian Online Prediction with Universal Guarantees.
Proceedings of the Advances in Neural Information Processing Systems 32: Annual Conference on Neural Information Processing Systems 2019, 2019

2018
A Sequential Non-Parametric Multivariate Two-Sample Test.
IEEE Trans. Inf. Theory, 2018

2017
The structural bioinformatics library: modeling in biomolecular science and beyond.
Bioinform., 2017

2016
Hybridizing rapidly exploring random trees and basin hopping yields an improved exploration of energy landscapes.
J. Comput. Chem., 2016

Predicting binding poses and affinities for protein - ligand complexes in the 2015 D3R Grand Challenge using a physical model with a statistical parameter estimation.
J. Comput. Aided Mol. Des., 2016

2015
Conformational ensembles and sampled energy landscapes: Analysis and comparison.
J. Comput. Chem., 2015

Beyond two-sample-tests: Localizing data discrepancies in high-dimensional spaces.
Proceedings of the 2015 IEEE International Conference on Data Science and Advanced Analytics, 2015

2014
Greedy Geometric Algorithms for Collection of Balls, with Applications to Geometric Approximation and Molecular Coarse-Graining.
Comput. Graph. Forum, 2014

2013
Connectivity Inference in Mass Spectrometry Based Structure Determination.
Proceedings of the Algorithms - ESA 2013, 2013

2012
Reconstructing 3D compact sets.
Comput. Geom., 2012

2011
Computing the volume of a union of balls: A certified algorithm.
ACM Trans. Math. Softw., 2011

On the Characterization and Selection of Diverse Conformational Ensembles with Applications to Flexible Docking.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011

Shape Matching by Localized Calculations of Quasi-Isometric Subsets, with Applications to the Comparison of Protein Binding Patches.
Proceedings of the Pattern Recognition in Bioinformatics, 2011

2010
Multi-scale Geometric Modeling of Ambiguous Shapes with : oleranced Balls and Compoundly Weighted alpha-shapes.
Comput. Graph. Forum, 2010

ESBTL: efficient PDB parser and data structure for the structural and geometric analysis of biological macromolecules.
Bioinform., 2010

Modeling macro-molecular interfaces with <tt>Intervor</tt>.
Bioinform., 2010

Revisiting the Voronoi Description of Protein-Protein Interfaces: Algorithms.
Proceedings of the Pattern Recognition in Bioinformatics, 2010

2009
Computing the arrangement of circles on a sphere, with applications in structural biology.
Comput. Geom., 2009

Design of the CGAL 3D Spherical Kernel and application to arrangements of circles on a sphere.
Comput. Geom., 2009

2008
Algorithm 889: Jet_fitting_3: - A Generic C++ Package for Estimating the Differential Properties on Sampled Surfaces via Polynomial Fitting.
ACM Trans. Math. Softw., 2008

A note on the problem of reporting maximal cliques.
Theor. Comput. Sci., 2008

Robust construction of the three-dimensional flow complex.
Proceedings of the 24th ACM Symposium on Computational Geometry, 2008

2007
Computing the exact arrangement of circles on a sphere, with applications in structural biology: video.
Proceedings of the 23rd ACM Symposium on Computational Geometry, 2007

2006
The conformal alpha shape filtration.
Vis. Comput., 2006

Special issue on SPM 05.
Graph. Model., 2006

The implicit structure of ridges of a smooth parametric surface.
Comput. Aided Geom. Des., 2006

2005
An algorithm for reporting maximal <i>c</i>-cliques.
Theor. Comput. Sci., 2005

Differential Topology and Geometry of Smooth Embedded Surfaces: Selected Topics.
Int. J. Comput. Geom. Appl., 2005

Estimating differential quantities using polynomial fitting of osculating jets.
Comput. Aided Geom. Des., 2005

Conformal Alpha Shapes.
Proceedings of the 2nd Symposium on Point Based Graphics, 2005

2003
On the angular defect of triangulations and the pointwise approximation of curvatures.
Comput. Aided Geom. Des., 2003

Randomized Jumplists: A Jump-and-Walk Dictionary Data Structure.
Proceedings of the STACS 2003, 20th Annual Symposium on Theoretical Aspects of Computer Science, Berlin, Germany, February 27, 2003

Molecular shape analysis based upon the morse-smale complex and the connolly function.
Proceedings of the 19th ACM Symposium on Computational Geometry, 2003

2002
Non-Intrusive Debugging and Incremental Visualization with the Geometric Stethoscope.
J. Graphics, GPU, & Game Tools, 2002

Smooth surface reconstruction via natural neighbour interpolation of distance functions.
Comput. Geom., 2002

2001
Natural neighbor coordinates of points on a surface.
Comput. Geom., 2001

Coarse-to-fine surface simplification with geometric guarantees.
Comput. Graph. Forum, 2001

2000
2D-Structure Drawings of Similar Molecules.
Proceedings of the Graph Drawing, 8th International Symposium, 2000

1999
Programming with CGAL: The Example of Triangulations.
Proceedings of the Fifteenth Annual Symposium on Computational Geometry, 1999

1998
Effective Nearest Neighbors Searching on the Hyper-Cube, with Applications to Molecular Clustering.
Proceedings of the Fourteenth Annual Symposium on Computational Geometry, 1998

1997
Combinatorial Properties of One-Dimensional Arrangements.
Exp. Math., 1997

Assembly sequencing with toleranced parts.
Comput. Aided Des., 1997

Algorithms for computing intersection and union of toleranced polygons with applications.
Artif. Intell. Eng. Des. Anal. Manuf., 1997

Effect of tolerancing on the relative positions of parts in an assembly.
Proceedings of the 1997 IEEE International Conference on Robotics and Automation, 1997

Bucket-Like Space Partitioning Data Structures with Applications to Ray-Tracing.
Proceedings of the Thirteenth Annual Symposium on Computational Geometry, 1997

1995
Filtering, Clustering and Hierarchy Construction: a New Solution for Ray-Tracing Complex Scenes.
Comput. Graph. Forum, 1995


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