Ibrahim Burak Özyurt

According to our database, Ibrahim Burak Özyurt authored at least 27 papers between 1996 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

Antibody Watch: Text mining antibody specificity from the literature.

Chun-Nan Hsu, Chia-Hui Chang, Thamolwan Poopradubsil, Amanda Lo, Karen A. William, Ko-Wei Lin, Anita E. Bandrowski, Ibrahim Burak Özyurt, Jeffrey S. Grethe, Maryann E. Martone

PLoS Comput. Biol., 2021

End-to-end Biomedical Question Answering via Bio-AnswerFinder and Discriminative Language Representation Models.

Ibrahim Burak Özyurt

Proceedings of the Working Notes of CLEF 2021 - Conference and Labs of the Evaluation Forum, Bucharest, Romania, September 21st - to, 2021

2020

Comparing the Use of Research Resource Identifiers and Natural Language Processing for Citation of Databases, Software, and Other Digital Artifacts.

Chun-Nan Hsu, Anita E. Bandrowski, Tom Gillespie, Jon Udell, Ko-Wei Lin, Ibrahim Burak Özyurt, Jeffrey S. Grethe, Maryann E. Martone

Comput. Sci. Eng., 2020

Bio-AnswerFinder: a system to find answers to questions from biomedical texts.

Ibrahim Burak Özyurt, Anita E. Bandrowski, Jeffrey S. Grethe

Database J. Biol. Databases Curation, 2020

On the effectiveness of small, discriminatively pre-trained language representation models for biomedical text mining.

Ibrahim Burak Özyurt

Proceedings of the First Workshop on Scholarly Document Processing, 2020

2019

Iterative Document Retrieval via Deep Learning Approaches for Biomedical Question Answering.

Ibrahim Burak Özyurt, Jeffrey S. Grethe

Proceedings of the 15th International Conference on eScience, 2019

2018

DataMed - an open source discovery index for finding biomedical datasets.

Xiaoling Chen, Anupama E. Gururaj, Ibrahim Burak Özyurt, Ruiling Liu, Ergin Soysal, Trevor Cohen, Firat Tiryaki, Yueling Li, Nansu Zong, Min Jiang, Deevakar Rogith, Mandana Salimi, Hyeon-Eui Kim, Philippe Rocca-Serra, Alejandra N. González-Beltrán, Claudiu Farcas, Todd Johnson, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Ian Fore, Lucila Ohno-Machado, Jeffrey S. Grethe, Hua Xu

J. Am. Medical Informatics Assoc., 2018

Foundry: a message-oriented, horizontally scalable ETL system for scientific data integration and enhancement.

Ibrahim Burak Özyurt, Jeffrey S. Grethe

Database J. Biol. Databases Curation, 2018

2016

The Cerebral Blood Flow Biomedical Informatics Research Network (CBFBIRN) data repository.

David Shin, Ibrahim Burak Özyurt, Greg G. Brown, Christine Fennema-Notestine, Thomas T. Liu

NeuroImage, 2016

The Function Biomedical Informatics Research Network Data Repository.

David B. Keator, Theo G. M. van Erp, Jessica A. Turner, Gary H. Glover, Bryon A. Mueller, Thomas T. Liu, James T. Voyvodic, Jerod Rasmussen, Vince D. Calhoun, Hyo Jong Lee, Arthur W. Toga, Sarah C. McEwen, Judith M. Ford, Daniel H. Mathalon, Michele T. Diaz, Daniel S. O'Leary, Henry Jeremy Bockholt, Syam Gadde, Adrian Preda, Cynthia G. Wible, Hal S. Stern, Aysenil Belger, Gregory McCarthy, I. Burak Özyurt, Steven G. Potkin, The FBIRN Consortium

NeuroImage, 2016

Development of DataMed, a Data Discovery Index Prototype by bioCADDIE: Laying the Groundwork for Biomedical Data Discovery.

Hua Xu, Jeffrey S. Grethe, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Yueling Li, Ibrahim Burak Özyurt, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado

Proceedings of the AMIA 2016, 2016

A Scalable Dataset Indexing Infrastructure for the bioCADDIE Data Discovery System.

Jeffrey S. Grethe, Ibrahim Burak Özyurt, Hua Xu, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado

Proceedings of the AMIA 2016, 2016

2013

The Cerebral Blood Flow Biomedical Informatics Research Network (CBFBIRN) database and analysis pipeline for arterial spin labeling MRI data.

David Shin, I. Burak Özyurt, Thomas T. Liu

Frontiers Neuroinformatics, 2013

2012

Automatic Identification and Classification of Noun Argument Structures in Biomedical Literature.

Ibrahim Burak Özyurt

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Processing Semantic Keyword Queries for Scientific Literature.

Ibrahim Burak Özyurt, Christopher Condit, Amarnath Gupta

Proceedings of the Natural Language Processing and Information Systems, 2012

2011

Multisite reliability of cognitive BOLD data.

Greg G. Brown, Daniel H. Mathalon, Hal S. Stern, Judith M. Ford, Bryon A. Mueller, Douglas N. Greve, Gregory McCarthy, James Voyvodic, Gary Glover, Michele T. Diaz, Elizabeth Yetter, I. Burak Özyurt, Kasper W. Jorgensen, Cynthia G. Wible, Jessica A. Turner, Wesley K. Thompson, Steven G. Potkin

NeuroImage, 2011

2010

Federated Web-accessible Clinical Data Management within an Extensible NeuroImaging Database.

I. Burak Özyurt, David B. Keator, Dingying Wei, Christine Fennema-Notestine, Karen R. Pease, Henry Jeremy Bockholt, Jeffrey S. Grethe

Neuroinformatics, 2010

Semi-supervised Methods for Biomedical Hedge Classification.

I. Burak Özyurt

Proceedings of the 4th IEEE International Conference on Semantic Computing (ICSC 2010), 2010

2009

Derived data storage and exchange workflow for large-scale neuroimaging analyses on the BIRN grid.

David B. Keator, Dingying Wei, Syam Gadde, Henry Jeremy Bockholt, Jeffrey S. Grethe, Daniel S. Marcus, Nicole Aucoin, Ibrahim Burak Özyurt

Frontiers Neuroinformatics, 2009

A Large Margin Approach to Anaphora Resolution for Neuroscience Knowledge Discovery.

I. Burak Özyurt

Proceedings of the Twenty-Second International Florida Artificial Intelligence Research Society Conference, 2009

2008

A National Human Neuroimaging Collaboratory Enabled by the Biomedical Informatics Research Network (BIRN).

David B. Keator, Jeffrey S. Grethe, Daniel S. Marcus, I. Burak Özyurt, Syam Gadde, Shawn N. Murphy, Steve Pieper, Douglas N. Greve, R. Notestine, Henry Jeremy Bockholt, Philip M. Papadopoulos

IEEE Trans. Inf. Technol. Biomed., 2008

A Semantic Parser for Neuro-Degenerative Disease Knowledge Discovery.

I. Burak Özyurt

Proceedings of the Twenty-First International Florida Artificial Intelligence Research Society Conference, 2008

2007

Search Result Refinement via Machine Learning from Labeled-Unlabeled Data for Meta-search.

I. Burak Özyurt, Greg G. Brown

Proceedings of the IEEE Symposium on Computational Intelligence and Data Mining, 2007

1999

SQFDiag: semi-quantitative model-based fault monitoring and diagnosis via episodic fuzzy rules.

Ibrahim Burak Özyurt, Lawrence O. Hall, Aydin K. Sunol

IEEE Trans. Syst. Man Cybern. Part A, 1999

Clustering with a genetically optimized approach.

Lawrence O. Hall, Ibrahim Burak Özyurt, James C. Bezdek

IEEE Trans. Evol. Comput., 1999

1998

Chemical Process Fault Diagnosis Using Kernel Retrofitted Fuzzy Genetic Algorithm Based Learner (FGAL) with a Hidden Markov Model.

Ibrahim Burak Özyurt, Aydin K. Sunol, Lawrence O. Hall

Proceedings of the Methodology and Tools in Knowledge-Based Systems, 1998

1996

A hybrid hierarchical neural network-fuzzy expert system approach to chemical process fault diagnosis.

I. Burak Özyurt, Abraham Kandel

Fuzzy Sets Syst., 1996