Ergin Soysal

According to our database, Ergin Soysal authored at least 17 papers between 2010 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2019

Cohort selection for clinical trials: n2c2 2018 shared task track 1.

Amber Stubbs, Michele Filannino, Ergin Soysal, Samuel Henry, Özlem Uzuner

J. Am. Medical Informatics Assoc., 2019

Developing Customizable Cancer Information Extraction Modules for Pathology Reports Using CLAMP.

Ergin Soysal, Jeremy L. Warner, Jingqi Wang, Min Jiang, Krysten Harvey, Sandeep Kumar Jain, Xiao Dong, Hsing-yi Song, Harish Siddhanamatha, Liwei Wang, Qi Dai, Qingxia Chen, Xianglin Du, Cui Tao, Ping Yang, Joshua Charles Denny, Hongfang Liu, Hua Xu

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

2018

CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines.

Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu, Serguei Pakhomov, Hongfang Liu, Hua Xu

J. Am. Medical Informatics Assoc., 2018

DataMed - an open source discovery index for finding biomedical datasets.

Xiaoling Chen, Anupama E. Gururaj, Ibrahim Burak Özyurt, Ruiling Liu, Ergin Soysal, Trevor Cohen, Firat Tiryaki, Yueling Li, Nansu Zong, Min Jiang, Deevakar Rogith, Mandana Salimi, Hyeon-Eui Kim, Philippe Rocca-Serra, Alejandra N. González-Beltrán, Claudiu Farcas, Todd Johnson, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Ian Fore, Lucila Ohno-Machado, Jeffrey S. Grethe, Hua Xu

J. Am. Medical Informatics Assoc., 2018

2017

A long journey to short abbreviations: developing an open-source framework for clinical abbreviation recognition and disambiguation (CARD).

Yonghui Wu, Joshua C. Denny, S. Trent Rosenbloom, Randolph A. Miller, Dario A. Giuse, Lulu Wang, Carmelo Blanquicett, Ergin Soysal, Jun Xu, Hua Xu

J. Am. Medical Informatics Assoc., 2017

Identifying Metastases related Information from Pathology Reports of Lung Cancer Patients.

Ergin Soysal, Jeremy L. Warner, Joshua C. Denny, Hua Xu

Proceedings of the Summit on Clinical Research Informatics, 2017

CLAMP - A User-Centric Clinical Natural Language Processing Toolkit.

Hua Xu, Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu

Proceedings of the AMIA 2017, 2017

2016

Leveraging syntactic and semantic graph kernels to extract pharmacokinetic drug drug interactions from biomedical literature.

Yaoyun Zhang, Heng-Yi Wu, Jun Xu, Jingqi Wang, Ergin Soysal, Lang Li, Hua Xu

BMC Syst. Biol., 2016

Development of DataMed, a Data Discovery Index Prototype by bioCADDIE: Laying the Groundwork for Biomedical Data Discovery.

Hua Xu, Jeffrey S. Grethe, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Yueling Li, Ibrahim Burak Özyurt, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado

Proceedings of the AMIA 2016, 2016

A Scalable Dataset Indexing Infrastructure for the bioCADDIE Data Discovery System.

Jeffrey S. Grethe, Ibrahim Burak Özyurt, Hua Xu, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado

Proceedings of the AMIA 2016, 2016

2015

A weighted and integrated drug-target interactome: drug repurposing for schizophrenia as a use case.

Liang-Chin Huang, Ergin Soysal, W. Jim Zheng, Zhongming Zhao, Hua Xu, Jingchun Sun

BMC Syst. Biol., 2015

UTH-CCB: The Participation of the SemEval 2015 Challenge - Task 14.

Jun Xu, Yaoyun Zhang, Jingqi Wang, Yonghui Wu, Min Jiang, Ergin Soysal, Hua Xu

Proceedings of the 9th International Workshop on Semantic Evaluation, 2015

Clinical Language Annotation, Modeling, and Processing Toolkit (CLAMP) - a user-centric NLP system.

Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu, Hua Xu

Proceedings of the AMIA 2015, 2015

2014

Identifying Metastases from Pathology Reports in Lung Cancer Patients.

Ergin Soysal, Jeremy L. Warner, Joshua C. Denny, Hua Xu

Proceedings of the AMIA 2014, 2014

2012

Security Standards for Electronic Health Records.

Öznur Esra Par, Ergin Soysal

Proceedings of the International Conference on Advances in Social Networks Analysis and Mining, 2012

2010

Ontology based information extraction on free text radiological reports using natural language processing approach ; Serbest metin radyoloji raporlarından, doğal dil işleme yaklaşımları kullanılarak ontoloji temelli enformasyon çıkarımı.

Ergin Soysal

PhD thesis, 2010

Design and evaluation of an ontology based information extraction system for radiological reports.

Ergin Soysal, Ilyas Cicekli, Nazife Baykal

Comput. Biol. Medicine, 2010