Zasha Weinberg

According to our database, Zasha Weinberg authored at least 12 papers between 2000 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2021

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases.

Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg

Nucleic Acids Res., 2021

Rfam 14: expanded coverage of metagenomic, viral and microRNA families.

Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov

Nucleic Acids Res., 2021

2011

Identification of Hammerhead Ribozymes in All Domains of Life Reveals Novel Structural Variations.

Jonathan Perreault, Zasha Weinberg, Adam Roth, Olivia Popescu, Pascal Chartrand, Gerardo Ferbeyre, Ronald R. Breaker

PLoS Comput. Biol., 2011

R2R - software to speed the depiction of aesthetic consensus RNA secondary structures.

Zasha Weinberg, Ronald R. Breaker

BMC Bioinform., 2011

2009

Finding Non-Coding RNAs through genome-Scale Clustering.

Huei-Hun Elizabeth Tseng, Zasha Weinberg, Jeremy Gore, Ronald R. Breaker, Walter L. Ruzzo

J. Bioinform. Comput. Biol., 2009

2007

A Computational Pipeline for High- Throughput Discovery of <i>cis</i>-Regulatory Noncoding RNA in Prokaryotes.

Zizhen Yao, Jeffrey E. Barrick, Zasha Weinberg, Shane J. Neph, Ronald R. Breaker, Martin Tompa, Walter L. Ruzzo

PLoS Comput. Biol., 2007

2006

CMfinder - a covariance model based RNA motif finding algorithm.

Zizhen Yao, Zasha Weinberg, Walter L. Ruzzo

Bioinform., 2006

Sequence-based heuristics for faster annotation of non-coding RNA families.

Zasha Weinberg, Walter L. Ruzzo

Bioinform., 2006

2005

Accurate annotation of non-coding RNAs in practical time.

Zasha Weinberg

PhD thesis, 2005

2004

Faster genome annotation of non-coding RNA families without loss of accuracy.

Zasha Weinberg, Walter L. Ruzzo

Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004

Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy.

Zasha Weinberg, Walter L. Ruzzo

Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

2000

An Approximate Search Engine for Structural Databases.

Jason Tsong-Li Wang, Xiong Wang, Dennis E. Shasha, Bruce A. Shapiro, Kaizhong Zhang, Xinhuan Zheng, Qicheng Ma, Zasha Weinberg

Proceedings of the 2000 ACM SIGMOD International Conference on Management of Data, 2000