Lukas A. Mueller

According to our database, Lukas A. Mueller authored at least 26 papers between 2001 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

Metabolic networks of the Nicotiana genus in the spotlight: content, progress and outlook.

Hartmut Foerster, James N. D. Battey, Nicolas Sierro, Nikolai V. Ivanov, Lukas A. Mueller

Briefings Bioinform., 2021

2020

The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems.

Elizabeth Arnaud, Marie-Angélique Laporte, Soonho Kim, Céline Aubert, Sabina Leonelli, Berta Miro, Laurel Cooper, Pankaj Jaiswal, Gideon Kruseman, Rosemary Shrestha, Pier Luigi Buttigieg, Christopher J. Mungall, Julian Pietragalla, Afolabi Agbona, Jacqueline Muliro, Jeffrey Detras, Vilma Hualla, Abhishek Rathore, Roma Rani Das, Ibnou Dieng, Guillaume Bauchet, Naama Menda, Cyril Pommier, Felix Shaw, David Lyon, Leroy Mwanzia, Henry Juarez, Enrico Bonaiuti, Brian Chiputwa, Oluremi Olatunbosun, Sandrine Auzoux, Esther Dzalé Yeumo, Lukas A. Mueller, Kevin A. T. Silverstein, Alexandra Lafargue, Erick Antezana, Medha Devare, Brian King

Patterns, 2020

2019

A quick guide for student-driven community genome annotation.

Prashant S. Hosmani, Teresa Shippy, Sherry Miller, Joshua B. Benoit, Monica C. Munoz-Torres, Mirella Flores, Lukas A. Mueller, Helen Wiersma-Koch, Tom D'Elia, Susan J. Brown, Surya Saha

PLoS Comput. Biol., 2019

BrAPI - an application programming interface for plant breeding applications.

Peter Selby, Rafael Abbeloos, Jan Erik Backlund, Martin Basterrechea Salido, Guillaume Bauchet, Omar E. Benites-Alfaro, Clayton L. Birkett, Viana C. Calaminos, Pierre Carceller, Guillaume Cornut, Bruno Vasques Costa, Jeremy D. Edwards, Richard Finkers, Star Yanxin Gao, Mehmood Ghaffar, Philip Glaser, Valentin Guignon, Puthick Hok, Andrzej Kilian, Patrick König, Jack Elendil B. Lagare, Matthias Lange, Marie-Angélique Laporte, Pierre Larmande, David S. LeBauer, David A Lyon, David F. Marshall, Dave Matthews, Iain Milne, Naymesh Mistry, Nicolas Morales, Lukas A. Mueller, Pascal Neveu, Evangelia Papoutsoglou, Brian Pearce, Ivan Perez-Masias, Cyril Pommier, Ricardo H. Ramirez-Gonzalez, Abhishek Rathore, Angel Manica Raquel, Sebastian Raubach, Trevor Rife, Kelly Robbins, Mathieu Rouard, Chaitanya Sarma, Uwe Scholz, Guilhem Sempéré, Paul D. Shaw, Reinhard Simon, Nahuel Soldevilla, Gordon Stephen, Qi Sun, Clarysabel Tovar, Grzegorz Uszynski, Maikel Verouden, The BrAPI consortium

Bioinform., 2019

2018

SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases.

Hartmut Foerster, Aureliano Bombarely, James N. D. Battey, Nicolas Sierro, Nikolai V. Ivanov, Lukas A. Mueller

Database J. Biol. Databases Curation, 2018

2017

The Tomato Expression Atlas.

Noé Fernández-Pozo, Yi Zheng, Stephen I. Snyder, Philippe Nicolas, Yoshihito Shinozaki, Zhangjun Fei, Carmen Catala, James J. Giovannoni, Jocelyn K. C. Rose, Lukas A. Mueller

Bioinform., 2017

Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community.

Surya Saha, Prashant S. Hosmani, Krystal Villalobos-Ayala, Sherry Miller, Teresa Shippy, Mirella Flores, Andrew Rosendale, Chris Cordola, Tracey Bell, Hannah Mann, Gabe DeAvila, Daniel DeAvila, Zachary Moore, Kyle Buller, Kathryn Ciolkevich, Samantha Nandyal, Robert Mahoney, Joshua Van Voorhis, Megan Dunlevy, David C. Farrow, David Hunter, Taylar Morgan, Kayla Shore, Victoria Guzman, Allison Izsak, Danielle E. Dixon, Andrew Cridge, Liliana Cano, Xiaolong Cao, Haobo Jiang, Nan Leng, Shannon Johnson, Brandi L. Cantarel, Stephen Richards, Adam C. English, Robert G. Shatters, Christopher P. Childers, Mei-Ju Chen, Wayne B. Hunter, Michelle Cilia, Lukas A. Mueller, Monica C. Munoz-Torres, David Nelson, Monica Poelchau, Joshua B. Benoit, Helen Wiersma-Koch, Tom D'Elia, Susan J. Brown

Database J. Biol. Databases Curation, 2017

2016

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

Ron Caspi, Richard Billington, Luciana Ferrer, Hartmut Foerster, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Pallavi Subhraveti, Daniel S. Weaver, Peter D. Karp

Nucleic Acids Res., 2016

Ricebase: a breeding and genetics platform for rice, integrating individual molecular markers, pedigrees and whole-genome-based data.

Jeremy D. Edwards, A. M. Baldo, Lukas A. Mueller

Database J. Biol. Databases Curation, 2016

2015

The Sol Genomics Network (SGN) - from genotype to phenotype to breeding.

Noé Fernández-Pozo, Naama Menda, Jeremy D. Edwards, Surya Saha, Isaak Y. Tecle, Susan R. Strickler, Aureliano Bombarely, Thomas Fisher-York, Anuradha Pujar, Hartmut Foerster, Aimin Yan, Lukas A. Mueller

Nucleic Acids Res., 2015

2014

The Genome Database for Rosaceae (GDR): year 10 update.

Sook Jung, Stephen P. Ficklin, Taein Lee, Chun-Huai Cheng, Anna Blenda, Ping Zheng, Jing Yu, Aureliano Bombarely, Ilhyung Cho, Sushan Ru, Kate Evans, Cameron Peace, Albert G. Abbott, Lukas A. Mueller, Mercy A. Olmstead, Dorrie Main

Nucleic Acids Res., 2014

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.

Ron Caspi, Tomer Altman, Richard Billington, Kate Dreher, Hartmut Foerster, Carol A. Fulcher, Timothy A. Holland, Ingrid M. Keseler, Anamika Kothari, Aya Kubo, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Pallavi Subhraveti, Daniel S. Weaver, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp

Nucleic Acids Res., 2014

solGS: a web-based tool for genomic selection.

Isaak Y. Tecle, Jeremy D. Edwards, Naama Menda, Chiedozie Egesi, Ismail Y. Rabbi, Peter Kulakow, Robert Kawuki, Jean-Luc Jannink, Lukas A. Mueller

BMC Bioinform., 2014

2013

From manual curation to visualization of gene families and networks across Solanaceae plant species.

Anuradha Pujar, Naama Menda, Aureliano Bombarely, Jeremy D. Edwards, Susan Strickler, Lukas A. Mueller

Database J. Biol. Databases Curation, 2013

2012

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

Ron Caspi, Tomer Altman, Kate Dreher, Carol A. Fulcher, Pallavi Subhraveti, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Anuradha Pujar, Alexander Glennon Shearer, Michael Travers, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp

Nucleic Acids Res., 2012

Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotypes.

Elizabeth Arnaud, Laurel Cooper, Rosemary Shrestha, Naama Menda, Rex T. Nelson, Luca Matteis, Milko Skofic, Ruth Bastow, Pankaj Jaiswal, Lukas A. Mueller, Graham McLaren

Proceedings of the KEOD 2012 - Proceedings of the International Conference on Knowledge Engineering and Ontology Development, Barcelona, Spain, 4, 2012

2011

The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl.

Aureliano Bombarely, Naama Menda, Isaak Y. Tecle, Robert M. Buels, Susan Strickler, Thomas Fischer-York, Anuradha Pujar, Jonathan Leto, Joseph Gosselin, Lukas A. Mueller

Nucleic Acids Res., 2011

The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data.

Sook Jung, Naama Menda, Seth Redmond, Robert M. Buels, Maren Friesen, Yuri R. Bendaña, Lacey-Anne Sanderson, Hilmar Lapp, Taein Lee, Bob MacCallum, Kirstin E. Bett, Scott Cain, Dave Clements, Lukas A. Mueller, Dorrie Main

Database J. Biol. Databases Curation, 2011

2010

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

Ron Caspi, Tomer Altman, Joseph M. Dale, Kate Dreher, Carol A. Fulcher, Fred Gilham, Pallavi Kaipa, Athikkattuvalasu S. Karthikeyan, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Suzanne M. Paley, Liviu Popescu, Anuradha Pujar, Alexander Glennon Shearer, Peifen Zhang, Peter D. Karp

Nucleic Acids Res., 2010

solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database.

Isaak Y. Tecle, Naama Menda, Robert M. Buels, Esther van der Knaap, Lukas A. Mueller

BMC Bioinform., 2010

2008

The SGN comparative map viewer.

Lukas A. Mueller, Adri A. Mills, Beth Skwarecki, Robert M. Buels, Naama Menda, Steven D. Tanksley

Bioinform., 2008

2005

PatMatch: a program for finding patterns in peptide and nucleotide sequences.

Thomas Yan, Danny Yoo, Tanya Z. Berardini, Lukas A. Mueller, Dan C. Weems, Shuai Weng, J. Michael Cherry, Seung Yon Rhee

Nucleic Acids Res., 2005

Querying and computing with BioCyc databases.

Markus Krummenacker, Suzanne M. Paley, Lukas A. Mueller, Thomas Yan, Peter D. Karp

Bioinform., 2005

2004

MetaCyc: a multiorganism database of metabolic pathways and enzymes.

Cynthia J. Krieger, Peifen Zhang, Lukas A. Mueller, Alfred Wang, Suzanne M. Paley, Martha Arnaud, John Pick, Seung Yon Rhee, Peter D. Karp

Nucleic Acids Res., 2004

2003

The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community.

Seung Yon Rhee, William D. Beavis, Tanya Z. Berardini, Guanghong Chen, David A. Dixon, Aisling Doyle, Margarita Garcia-Hernandez, Eva Huala, Gabriel Lander, Mary Montoya, Neil Miller, Lukas A. Mueller, Suparna Mundodi, Leonore Reiser, Julie Tacklind, Dan C. Weems, Yihe Wu, Iris Xu, Daniel Yoo, Jungwon Yoon, Peifen Zhang

Nucleic Acids Res., 2003

2001

The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant.

Eva Huala, Allan Dickerman, Margarita Garcia-Hernandez, Danforth Weems, Leonore Reiser, Frank LaFond, David Hanley, Donald Kiphart, Mingzhe Zhuang, Wen Huang, Lukas A. Mueller, Debika Bhattacharyya, Devaki Bhaya, Bruno W. S. Sobral, William D. Beavis, David Meinke, Christopher D. Town, Chris Somerville, Seung Yon Rhee

Nucleic Acids Res., 2001