Masakazu Sekijima
Orcid: 0000-0002-3806-9535
According to our database1,
Masakazu Sekijima
authored at least 25 papers
between 2002 and 2025.
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Bibliography
2025
DiffInt: A Diffusion Model for Structure-Based Drug Design with Explicit Hydrogen Bond Interaction Guidance.
J. Chem. Inf. Model., 2025
PRA-MutPred: Predicting the Effect of Point Mutations in Protein-RNA Complexes Using Structural Features.
J. Chem. Inf. Model., 2025
2024
Mothra: Multiobjective <i>de novo</i> Molecular Generation Using Monte Carlo Tree Search.
J. Chem. Inf. Model., 2024
IEV2Mol: Molecular Generative Model Considering Protein-Ligand Interaction Energy Vectors.
J. Chem. Inf. Model., 2024
2022
Screening for Inhibitors of Main Protease in SARS-CoV-2: In Silico and In Vitro Approach Avoiding Peptidyl Secondary Amides.
J. Chem. Inf. Model., 2022
An Improved Model for Predicting Compound Retrosynthesizability Using Machine Learning.
Proceedings of the 22nd IEEE International Conference on Bioinformatics and Bioengineering, 2022
2021
MERMAID: an open source automated hit-to-lead method based on deep reinforcement learning.
J. Cheminformatics, 2021
2020
ProAffiMuSeq: sequence-based method to predict the binding free energy change of protein-protein complexes upon mutation using functional classification.
Bioinform., 2020
2019
Improved Method of Structure-Based Virtual Screening via Interaction-Energy-Based Learning.
J. Chem. Inf. Model., 2019
2018
Web Molecular Graphics: Emerging Technologies & Standards (NII Shonan Meeting 2018-19).
NII Shonan Meet. Rep., 2018
J. Bioinform. Comput. Biol., 2018
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018
2016
Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015.
BMC Bioinform., February, 2016
2015
Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, 2015
2012
Distance-based Factor Graph Linearization and Sampled Max-sum Algorithm for Efficient 3D Potential Decoding of Macromolecules.
Inf. Media Technol., 2012
2011
Proceedings of the 2011 International Conference on Parallel Processing Workshops, 2011
2008
Free Energy Landscape Analysis System Based on Parallel Molecular Dynamics Simulation.
Inf. Media Technol., 2008
Large-Scale Computing for Protein-Protein Binding Free Energy Calculation.
Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2008
2007
Optimization of Molecular Dynamics Simulation on Cell Processor.
Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2007
Development of an SVM based Prediction System for Metalbinding Sites in Protein.
Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2007
Development of Molecular Dynamics Simulation Based Flexible Docking System.
Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2007
Optimization and evaluation of parallel molecular dynamics simulation on blue gene/L.
Proceedings of the IASTED International Conference on Parallel and Distributed Computing and Networks, 2007
High-Density Surface Reconstruction of Fine Arts and Documents for Complete Reproduction and Counterfeit Detection.
Proceedings of the IEEE International Conference on Networking, Sensing and Control, 2007
2003
Proceedings of the High Performance Computing, 5th International Symposium, 2003
2002
Automatic Improvement of Scheduling Policies in Parsley Parallel Programming Environment.
Proceedings of the International Conference on Parallel and Distributed Computing Systems, 2002