Tamotsu Noguchi

According to our database, Tamotsu Noguchi authored at least 26 papers between 1997 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2019

A Privacy-Preserving Query System using Fully Homomorphic Encryption with Real-World Implementation for Medicine-Side Effect Search.

Yusheng Jiang, Tamotsu Noguchi, Nobuyuki Kanno, Yoshiko Yasumura, Takuya Suzuki, Yu Ishimaki, Hayato Yamana

Proceedings of the 21st International Conference on Information Integration and Web-based Applications & Services, 2019

2016

Identifying Protein Short Linear Motifs by Position-Specific Scoring Matrix.

Chun Fang, Tamotsu Noguchi, Hayato Yamana, Fuzhen Sun

Proceedings of the Advances in Swarm Intelligence, 7th International Conference, 2016

2015

Condensing position-specific scoring matrixs by the Kidera factors for ligand-binding site prediction.

Chun Fang, Tamotsu Noguchi, Hayato Yamana

Int. J. Data Min. Bioinform., 2015

2014

Analysis of evolutionary conservation patterns and their influence on identifying protein functional sites.

Chun Fang, Tamotsu Noguchi, Hayato Yamana

J. Bioinform. Comput. Biol., 2014

Simplified sequence-based method for ATP-binding prediction using contextual local evolutionary conservation.

Chun Fang, Tamotsu Noguchi, Hayato Yamana

Algorithms Mol. Biol., 2014

2013

MFSPSSMpred: identifying short disorder-to-order binding regions in disordered proteins based on contextual local evolutionary conservation.

Chun Fang, Tamotsu Noguchi, Daisuke Tominaga, Hayato Yamana

BMC Bioinform., 2013

2011

SAHG, a comprehensive database of predicted structures of all human proteins.

Chie Motono, Junichi Nakata, Ryotaro Koike, Kana Shimizu, Matsuyuki Shirota, Takayuki Amemiya, Kentaro Tomii, Nozomi Nagano, Naofumi Sakaya, Kiyotaka Misoo, Miwa Sato, Akinori Kidera, Hidekazu Hiroaki, Tsuyoshi Shirai, Kengo Kinoshita, Tamotsu Noguchi, Motonori Ota

Nucleic Acids Res., 2011

2010

POODLE-I: Disordered Region Prediction by Integrating POODLE Series and Structural Information Predictors Based on a Workflow Approach.

Shuichi Hirose, Kana Shimizu, Tamotsu Noguchi

Silico Biol., 2010

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.

Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi

J. Biomed. Semant., 2010

2008

Large-Scale Computing for Protein-Protein Binding Free Energy Calculation.

Junichi Ikeda, Kazuki Ohno, Sayaka Akioka, Masaya Orita, Yoichi Muraoka, Tamotsu Noguchi, Masakazu Sekijima

Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2008

2007

Predicting mostly disordered proteins by using structure-unknown protein data.

Kana Shimizu, Yoichi Muraoka, Shuichi Hirose, Kentaro Tomii, Tamotsu Noguchi

BMC Bioinform., 2007

POODLE-S: web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix.

Kana Shimizu, Shuichi Hirose, Tamotsu Noguchi

Bioinform., 2007

POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions.

Shuichi Hirose, Kana Shimizu, Satoru Kanai, Yutaka Kuroda, Tamotsu Noguchi

Bioinform., 2007

Development of an SVM based Prediction System for Metalbinding Sites in Protein.

Masami Nakazawa, Masami Takata, Kiyonobu Yokota, Tamotsu Noguchi, Masakazu Sekijima, Kazuki Joe

Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2007

Development of Molecular Dynamics Simulation Based Flexible Docking System.

Sachi Kimura, Masakazu Sekijima, Masami Takata, Tamotsu Noguchi, Kazuki Joe

Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2007

Optimization and evaluation of parallel molecular dynamics simulation on blue gene/L.

Masakazu Sekijima, Junta Doi, Tamotsu Noguchi, Yutaka Akiyama, S. Shimizu

Proceedings of the IASTED International Conference on Parallel and Distributed Computing and Networks, 2007

2005

Feature Selection Based on Physicochemical Properties of Redefined N-term Region and C-term Regions for Predicting Disorder.

Kana Shimizu, Yoichi Muraoka, Shuichi Hirose, Tamotsu Noguchi

Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

2003

PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB) in 2003.

Tamotsu Noguchi, Yutaka Akiyama

Nucleic Acids Res., 2003

2002

Using Data Compression for Multidimensional Distribution Analysis.

Kentaro Onizuka, Tamotsu Noguchi, Yutaka Akiyama, Hideo Matsuda

IEEE Intell. Syst., 2002

2001

PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB).

Tamotsu Noguchi, Hideo Matsuda, Yutaka Akiyama

Nucleic Acids Res., 2001

2000

Quick selection of representative protein chain sets based on customizable requirements.

Tamotsu Noguchi, Kentaro Onizuka, Makoto Ando, Hideo Matsuda, Yutaka Akiyama

Bioinform., 2000

1999

ESCAPE: Parallel Tree Search System for Conformational Analysis of Peptides.

Makoto Ando, Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi

Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 1999

Biological- and Chemical- Parallel Applications on a PC Cluster.

Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi, Makoto Ando

Proceedings of the High Performance Computing, Second International Symposium, 1999

1997

PDB-REPRDB: A Database of Representative Protein Chains in PDB (Protein Data Bank).

Tamotsu Noguchi, Kentaro Onizuka, Yutaka Akiyama, Minoru Saito

Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

Parallel PDB Data Retriever "PDB Diving Booster".

Kentaro Onizuka, Tamotsu Noguchi, Minoru Saito, Yutaka Akiyama

Proceedings of the High Performance Computing, International Symposium, 1997

Parallelization of Space Plasma Particle Simulation.

Yutaka Akiyama, Kiyotaka Misoo, Yoshiharu Omura, Hiroshi Matsumoto, Minoru Saito, Tamotsu Noguchi, Kentaro Onizuka, Makoto Ando

Proceedings of the High Performance Computing, International Symposium, 1997