Tim Clark

According to our database, Tim Clark authored at least 46 papers between 2000 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

Discovery of signatures of fatal neonatal illness in vital signs using highly comparative time-series analysis.

Justin Niestroy, J. Randall Moorman, Maxwell Adam Levinson, Sadnan Al Manir, Timothy W. Clark, Karen Fairchild, Douglas E. Lake

npj Digit. Medicine, 2022

FAIRSCAPE: a Framework for FAIR and Reproducible Biomedical Analytics.

Maxwell Adam Levinson, Justin Niestroy, Sadnan Al Manir, Karen Fairchild, Douglas E. Lake, J. Randall Moorman, Timothy W. Clark

Neuroinformatics, 2022

2021

The FAIRSCAPE digital commons framework and Evidence Graphs for reproducibility (keynote).

Tim Clark

Proceedings of the Workshop on Digital Infrastructures for Scholarly Content Objects (DISCO 2021) co-located with ACM/IEEE Joint Conference on Digital Libraries 2021(JCDL 2021), 2021

Evidence Graphs: Supporting Transparent and FAIR Computation, with Defeasible Reasoning on Data, Methods, and Results.

Sadnan Al Manir, Justin Niestroy, Maxwell Adam Levinson, Timothy W. Clark

Proceedings of the Provenance and Annotation of Data and Processes, 2021

2020

Unique, Persistent, Resolvable: Identifiers as the Foundation of FAIR.

Nick S. Juty, Sarala M. Wimalaratne, Stian Soiland-Reyes, John A. Kunze, Carole A. Goble, Tim Clark

Data Intell., 2020

FAIR Data Reuse - the Path through Data Citation.

Paul Groth, Helena Cousijn, Tim Clark, Carole A. Goble

Data Intell., 2020

Software and Data Citation.

Daniel S. Katz, Neil P. Chue Hong, Tim Clark, Martin Fenner, Maryann E. Martone

Comput. Sci. Eng., 2020

2019

Software Citation Implementation Challenges.

Daniel S. Katz, Daina Bouquin, Neil P. Chue Hong, Jessica Hausman, Catherine Mary Jones, Daniel Chivvis, Tim Clark, Mercè Crosas, Stephan Druskat, Martin Fenner, Tom Gillespie, Alejandra N. González-Beltrán, Morane Gruenpeter, Ted Habermann, Robert Haines, Melissa Harrison, Edwin A. Henneken, Lorraine J. Hwang, Matthew B. Jones, Alastair A. Kelly, David N. Kennedy, Katrin Leinweber, Fernando Rios, Carly Robinson, Ilian T. Todorov, Mingfang Wu, Qian Zhang

CoRR, 2019

2017

Interoperability and FAIRness through a novel combination of Web technologies.

Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Arnold Kuzniar, Anand Gavai, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier

PeerJ Comput. Sci., 2017

2016

Interoperability and FAIRness through a novel combination of Web technologies.

Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier

PeerJ Prepr., 2016

2015

Achieving human and machine accessibility of cited data in scholarly publications.

Joan Starr, Eleni Castro, Mercè Crosas, Michel Dumontier, Robert R. Downs, Ruth E. Duerr, Laurel L. Haak, Melissa A. Haendel, Iván Herman, Simon Hodson, Joe Hourclé, John Ernest Kratz, Jennifer Lin, Lars Holm Nielsen, Amy Nurnberger, Stefan Pröll, Andreas Rauber, Simone Sacchi, Arthur P. Smith, Michael Taylor, Tim Clark

PeerJ Comput. Sci., 2015

Formalizing Knowledge and Evidence about Potential Drug-drug Interactions.

Jodi Schneider, Mathias Brochhausen, Samuel Rosko, Paolo Ciccarese, William R. Hogan, Daniel C. Malone, Yifan Ning, Tim Clark, Richard D. Boyce

Proceedings of International Workshop on Biomedical Data Mining, 2015

Feasibility of Information Interoperability in the Humanitarian Domain.

Tim Clark, Carsten Keßler, Hemant Purohit

Proceedings of the 2015 AAAI Spring Symposia, 2015

2014

Recent applications of web semantics in eLifeScience.

Tim Clark, Marco Roos

J. Web Semant., 2014

Next Generation Scientific Publishing and the Web of Data.

Tim Clark

Semantic Web, 2014

CiTO + SWAN: The web semantics of bibliographic records, citations, evidence and discourse relationships.

Paolo Ciccarese, David M. Shotton, Silvio Peroni, Tim Clark

Semantic Web, 2014

Simulating "soft" electronics.

Tim Clark

J. Cheminformatics, 2014

Pain Research Forum: application of scientific social media frameworks in neuroscience.

Sudeshna Das, Patricia G. Mccaffrey, Megan Talkington, Neil Andrews, Stephane Corlosquet, Adrian Ivinson, Tim Clark

Frontiers Neuroinformatics, 2014

Semantic Web repositories for genomics data using the eXframe platform.

Emily Merrill, Stephane Corlosquet, Paolo Ciccarese, Tim Clark, Sudeshna Das

J. Biomed. Semant., 2014

Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications.

Tim Clark, Paolo Ciccarese, Carole A. Goble

J. Biomed. Semant., 2014

Using eXframe to Build Semantic Web Genomics Repositories.

Emily Merrill, Shannan J. Ho Sui, Stephane Corlosquet, Tim Clark, Sudeshna Das

Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

Annotopia: An Open Source Universal Annotation Server for Biomedical Research.

Paolo Ciccarese, Tim Clark

Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

Using the Micropublications Ontology and the Open Annotation Data Model to Represent Evidence within a Drug-Drug Interaction Knowledge Base.

Jodi Schneider, Paolo Ciccarese, Tim Clark, Richard D. Boyce

Proceedings of the 4th Workshop on Linked Science 2014, 2014

2013

Web Annotation as a First-Class Object.

Paolo Ciccarese, Stian Soiland-Reyes, Tim Clark

IEEE Internet Comput., 2013

PAV ontology: provenance, authoring and versioning.

Paolo Ciccarese, Stian Soiland-Reyes, Khalid Belhajjame, Alasdair J. G. Gray, Carole A. Goble, Tim Clark

J. Biomed. Semant., 2013

2012

Open semantic annotation of scientific publications using DOMEO.

Paolo Ciccarese, Marco Ocana, Tim Clark

J. Biomed. Semant., 2012

A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework.

Anita E. Bandrowski, Jonathan Cachat, Yuling Li, Hans-Michael Müller, Paul W. Sternberg, Paolo Ciccarese, Tim Clark, Luis N. Marenco, Rixin Wang, Vadim Astakhov, Jeffrey S. Grethe, Maryann E. Martone

Database J. Biol. Databases Curation, 2012

Invited Talks.

Timothy W. Clark, William W. Cohen, Lawrence Hunter, Chris J. Lintott, Jude W. Shavlik

Proceedings of the Discovery Informatics: The Role of AI Research in Innovating Scientific Processes, 2012

2011

The Future of Research Communication (Dagstuhl Perspectives Workshop 11331).

Tim Clark, Anita de Waard, Ivan Herman, Eduard H. Hovy

Dagstuhl Reports, 2011

Improving The Future of Research Communications and e-Scholarship (Dagstuhl Perspectives Workshop 11331).

Philip E. Bourne, Timothy W. Clark, Robert Dale, Anita de Waard, Ivan Herman, Eduard H. Hovy, David M. Shotton

Dagstuhl Manifestos, 2011

eXframe: reusable framework for storage, analysis and visualization of genomics experiments.

Amit U. Sinha, Emily Merrill, Scott A. Armstrong, Timothy W. Clark, Sudeshna Das

BMC Bioinform., 2011

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside.

Joanne S. Luciano, Bosse Andersson, Colin R. Batchelor, Olivier Bodenreider, Tim Clark, Christine K. Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter J. Kos, Julia Kozlovsky, Timothy Lebo, M. Scott Marshall, Jamie P. McCusker, Deborah L. McGuinness, Chimezie Ogbuji, Elgar Pichler, Robert L. Powers, Eric Prud'hommeaux, Matthias Samwald, Lynn M. Schriml, Peter J. Tonellato, Patricia L. Whetzel, Jun Zhao, Susie Stephens, Michel Dumontier

J. Biomed. Semant., 2011

An open annotation ontology for science on web 3.0.

Paolo Ciccarese, Marco Ocana, Leyla Jael García Castro, Sudeshna Das, Tim Clark

J. Biomed. Semant., 2011

2009

Building biomedical web communities using a semantically aware content management system.

Sudeshna Das, Lisa Girard, Tom Green, Louis Weitzman, Alister Lewis-Bowen, Tim Clark

Briefings Bioinform., 2009

Produce and Consume Linked Data with Drupal!

Stephane Corlosquet, Renaud Delbru, Tim Clark, Axel Polleres, Stefan Decker

Proceedings of the Semantic Web - ISWC 2009, 8th International Semantic Web Conference, 2009

Scientific publications on Web 3.0.

Mark Goetz, Tim Clark, Sudeshna Das, Lisa Girard

Proceedings of the Rethinking Electronic Publishing: Innovation in Communication Paradigms and Technologies, 2009

2008

The SWAN biomedical discourse ontology.

Paolo Ciccarese, Elizabeth Wu, Gwendolyn T. Wong, Marco Ocana, June Kinoshita, Alan Ruttenberg, Tim Clark

J. Biomed. Informatics, 2008

2007

Advancing translational research with the Semantic Web.

Alan Ruttenberg, Tim Clark, William J. Bug, Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M. Scott Marshall, Chimezie Ogbuji, Jonathan Rees, Susie Stephens, Gwendolyn T. Wong, Elizabeth Wu, Davide Zaccagnini, Tonya Hongsermeier, Eric Neumann, Ivan Herman, Kei-Hoi Cheung

BMC Bioinform., 2007

AlzPharm: integration of neurodegeneration data using RDF.

Hugo Y. K. Lam, Luis N. Marenco, Tim Clark, Yong Gao, June Kinoshita, Gordon M. Shepherd, Perry L. Miller, Elizabeth Wu, Gwendolyn T. Wong, Nian Liu, Chiquito J. Crasto, Thomas M. Morse, Susie Stephens, Kei-Hoi Cheung

BMC Bioinform., 2007

Alzforum and SWAN: the present and future of scientific web communities.

Tim Clark, June Kinoshita

Briefings Bioinform., 2007

Knowledge Integration in Biomedicine: Technology and Community.

Tim Clark

Briefings Bioinform., 2007

2006

SWAN: A distributed knowledge infrastructure for Alzheimer disease research.

Yong Gao, June Kinoshita, Elizabeth Wu, Eric L. Miller, Ryan Lee, Andy Seaborne, Steve Cayzer, Tim Clark

J. Web Semant., 2006

2004

Globally distributed object identification for biological knowledgebases.

Tim Clark, Sean Martin, Ted Liefeld

Briefings Bioinform., 2004

2003

Computational knowledge integration in biopharmaceutical research.

David Ficenec, Mark Osborne, Joël R. Pradines, Daniel R. Richards, Ramon M. Felciano, Raymond J. Cho, Richard O. Chen, Ted Liefeld, James Owen, Alan Ruttenberg, Christian G. Reich, Joseph Horvath, Tim Clark

Briefings Bioinform., 2003

Editorial: Identity and Interoperability in Bioinformatics.

Tim Clark

Briefings Bioinform., 2003

2000

Virtual Private Networks with QoS.

Tim Clark

Inf. Secur. J. A Glob. Perspect., 2000