Misha Kapushesky

According to our database1, Misha Kapushesky authored at least 20 papers between 2003 and 2012.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

On csauthors.net:

Bibliography

2012
Gene Expression Atlas update - a value-added database of microarray and sequencing-based functional genomics experiments.
Nucleic Acids Research, 2012

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures.
Nucleic Acids Research, 2012

2011
OntoCAT - simple ontology search and integration in Java, R and REST/JavaScript.
BMC Bioinformatics, 2011

ontoCAT: an R package for ontology traversal and search.
Bioinformatics, 2011

A pipeline for RNA-seq data processing and quality assessment.
Bioinformatics, 2011

2010
Gene Expression Atlas at the European Bioinformatics Institute.
Nucleic Acids Research, 2010

Modeling sample variables with an Experimental Factor Ontology.
Bioinformatics, 2010

2009
ArrayExpress update - from an archive of functional genomics experiments to the atlas of gene expression.
Nucleic Acids Research, 2009

Importing ArrayExpress datasets into R/Bioconductor.
Bioinformatics, 2009

Developing an Ontology from the Application Up.
Proceedings of the 5th International Workshop on OWL: Experiences and Directions (OWLED 2009), 2009

2008
4DXpress: a database for cross-species expression pattern comparisons.
Nucleic Acids Research, 2008

Comparing and Analysing Gene Expression Patterns Across Animal Species Using 4DXpress.
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008

2007
ArrayExpress - a public database of microarray experiments and gene expression profiles.
Nucleic Acids Research, 2007

2006
ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression.
Bioinformatics, 2006

2005
ArrayExpress - a public repository for microarray gene expression data at the EBI.
Nucleic Acids Research, 2005

A new algorithm for comparing and visualizing relationships between hierarchical and flat gene expression data clusterings.
Bioinformatics, 2005

The ArrayExpress gene expression database: a software engineering and implementation perspective.
Bioinformatics, 2005

2004
Expression Profiler: next generation - an online platform for analysis of microarray data.
Nucleic Acids Research, 2004

Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation.
Proceedings of the Algorithms in Bioinformatics, 4th International Workshop, 2004

2003
ArrayExpress - a public repository for microarray gene expression data at the EBI.
Nucleic Acids Research, 2003


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