Jaak Vilo

According to our database, Jaak Vilo authored at least 38 papers between 1992 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

g:Profiler - interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update).

Liis Kolberg, Uku Raudvere, Ivan Kuzmin, Priit Adler, Jaak Vilo, Hedi Peterson

Nucleic Acids Res., July, 2023

2020

gprofiler2 - an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler.

Liis Kolberg, Uku Raudvere, Ivan Kuzmin, Jaak Vilo, Hedi Peterson

F1000Research, 2020

PAWER: protein array web exploreR.

Dmytro Fishman, Ivan Kuzmin, Priit Adler, Jaak Vilo, Hedi Peterson

BMC Bioinform., 2020

2019

g: Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update).

Uku Raudvere, Liis Kolberg, Ivan Kuzmin, Tambet Arak, Priit Adler, Hedi Peterson, Jaak Vilo

Nucleic Acids Res., 2019

2016

g: Profiler - a web server for functional interpretation of gene lists (2016 update).

Jüri Reimand, Tambet Arak, Priit Adler, Liis Kolberg, Sulev Reisberg, Hedi Peterson, Jaak Vilo

Nucleic Acids Res., 2016

seqlm: an MDL based method for identifying differentially methylated regions in high density methylation array data.

Raivo Kolde, Kaspar Märtens, Kaie Lokk, Sven Laur, Jaak Vilo

Bioinform., 2016

2015

ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap.

Tauno Metsalu, Jaak Vilo

Nucleic Acids Res., 2015

GOsummaries: an R Package for Visual Functional Annotation of Experimental Data.

Raivo Kolde, Jaak Vilo

F1000Research, 2015

FUN-L: gene prioritization for RNAi screens.

Jonathan G. Lees, Jean-Karim Hériché, Ian Morilla, José María Fernández, Priit Adler, Martin Krallinger, Jaak Vilo, Alfonso Valencia, Jan Ellenberg, Juan A. G. Ranea, Christine A. Orengo

Bioinform., 2015

2013

A new way to protect privacy in large-scale genome-wide association studies.

Liina Kamm, Dan Bogdanov, Sven Laur, Jaak Vilo

Bioinform., 2013

2012

Robust rank aggregation for gene list integration and meta-analysis.

Raivo Kolde, Sven Laur, Priit Adler, Jaak Vilo

Bioinform., 2012

Fraud Detection: Methods of Analysis for Hypergraph Data.

Anna Leontjeva, Konstantin Tretyakov, Jaak Vilo, Taavi Tamkivi

Proceedings of the International Conference on Advances in Social Networks Analysis and Mining, 2012

2011

g: Profiler - a web server for functional interpretation of gene lists (2011 update).

Jüri Reimand, Tambet Arak, Jaak Vilo

Nucleic Acids Res., 2011

Fast fully dynamic landmark-based estimation of shortest path distances in very large graphs.

Konstantin Tretyakov, Abel Armas-Cervantes, Luciano García-Bañuelos, Jaak Vilo, Marlon Dumas

Proceedings of the 20th ACM Conference on Information and Knowledge Management, 2011

2010

Information Retrieval of Word Form Variants in Spoken Language Corpora Using Generalized Edit Distance.

Siim Orasmaa, Reina Käärik, Jaak Vilo, Tiit Hennoste

Proceedings of the International Conference on Language Resources and Evaluation, 2010

National Programme for Estonian Language Technology: a Pre-final Summary.

Einar Meister, Jaak Vilo, Neeme Kahusk

Proceedings of the Human Language Technologies - The Baltic Perspective, 2010

An Evolutionary Model of DNA Substring Distribution.

Meelis Kull, Konstantin Tretyakov, Jaak Vilo

Proceedings of the Algorithms and Applications, 2010

2009

VisHiC - hierarchical functional enrichment analysis of microarray data.

Darya Krushevskaya, Hedi Peterson, Jüri Reimand, Meelis Kull, Jaak Vilo

Nucleic Acids Res., 2009

2008

GraphWeb: mining heterogeneous biological networks for gene modules with functional significance.

Jüri Reimand, Laur Tooming, Hedi Peterson, Priit Adler, Jaak Vilo

Nucleic Acids Res., 2008

KEGGanim: pathway animations for high-throughput data.

Priit Adler, Jüri Reimand, Jürgen Jänes, Raivo Kolde, Hedi Peterson, Jaak Vilo

Bioinform., 2008

Fast approximate hierarchical clustering using similarity heuristics.

Meelis Kull, Jaak Vilo

BioData Min., 2008

Strengthening the Estonian Language Technology.

Einar Meister, Jaak Vilo

Proceedings of the International Conference on Language Resources and Evaluation, 2008

Flexible Database Platform for Biomedical Research with Multiple User Interfaces and a Universal Query Engine.

Margus Jäger, Liina Kamm, Darja Krushevskaja, Harry-Anton Talvik, Janno Veldemann, Andres Vilgota, Jaak Vilo

Proceedings of the Databases and Information Systems V, 2008

2007

g: Profiler - a web-based toolset for functional profiling of gene lists from large-scale experiments.

Jüri Reimand, Meelis Kull, Hedi Peterson, Jaanus Hansen, Jaak Vilo

Nucleic Acids Res., 2007

2004

Expression Profiler: next generation - an online platform for analysis of microarray data.

Misha Kapushesky, Patrick Kemmeren, Aedín C. Culhane, Steffen Durinck, Jan Ihmels, Christine Körner, Meelis Kull, Aurora Torrente, Ugis Sarkans, Jaak Vilo, Alvis Brazma

Nucleic Acids Res., 2004

2003

ArrayExpress - a public repository for microarray gene expression data at the EBI.

Alvis Brazma, Helen E. Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Jaak Vilo, Niran Abeygunawardena, Ele Holloway, Misha Kapushesky, Patrick Kemmeren, Gonzalo Garcia Lara, Ahmet Oezcimen, Philippe Rocca-Serra, Susanna-Assunta Sansone

Nucleic Acids Res., 2003

2002

Building and analysing genome-wide gene disruption networks.

Johan Rung, Thomas Schlitt, Alvis Brazma, K. Freivalds, Jaak Vilo

Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

Correlating gene promoters and expression in gene disruption experiments.

Kimmo Palin, Esko Ukkonen, Alvis Brazma, Jaak Vilo

Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

2001

Prediction of the coupling specificity of G protein coupled receptors to their G proteins.

Steffen Möller, Jaak Vilo, Michael D. R. Croning

Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001

2000

Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data.

Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Robinson, Esko Ukkonen

Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

1998

Pattern Discovery in Biosequences.

Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen

Proceedings of the Grammatical Inference, 4th International Colloquium, 1998

Predicting gene regulatory elements from their expression data in the complete yeast genome.

Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen

Proceedings of the German Conference on Bioinformatics, 1998

1997

Data Mining for Regulatory Elements in Yeast Genome.

Alvis Brazma, Jaak Vilo, Esko Ukkonen, Kimmo Valtonen

Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

Finding transcription factor binding site combinations in the yeast genome.

Alvis Brazma, Jaak Vilo, Esko Ukkonen

Proceedings of the German Conference on Bioinformatics, 1997

1996

Discovering Patterns and Subfamilies in Biosequences.

Alvis Brazma, Inge Jonassen, Esko Ukkonen, Jaak Vilo

Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996

Discovering Unbounded Unions of Regular Pattern Languages from Positive Examples (Extended Abstract).

Alvis Brazma, Esko Ukkonen, Jaak Vilo

Proceedings of the Algorithms and Computation, 7th International Symposium, 1996

1994

An ALgorithm for Learning Hierarchical Classifiers.

Jyrki Kivinen, Heikki Mannila, Esko Ukkonen, Jaak Vilo

Proceedings of the Machine Learning: ECML-94, 1994

1992

Implementing Attribute Grammars by Computational Models.

Jaak Vilo

Proceedings of the Programming Language Implementation and Logic Programming, 1992