Nour Almadhoun

According to our database, Nour Almadhoun authored at least 16 papers between 2015 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

SequenceLab: A Comprehensive Benchmark of Computational Methods for Comparing Genomic Sequences.

Maximilian-David Rumpf, Mohammed Alser, Arvid E. Gollwitzer, Joël Lindegger, Nour Almadhoun, Can Firtina, Serghei Mangul, Onur Mutlu

CoRR, 2023

2022

COVIDHunter: COVID-19 pandemic wave prediction and mitigation via seasonality-aware modeling.

Mohammed Alser, Jeremie S. Kim, Nour Almadhoun Alserr, Stefan W. Tell, Onur Mutlu

CoRR, 2022

Going From Molecules to Genomic Variations to Scientific Discovery: Intelligent Algorithms and Architectures for Intelligent Genome Analysis.

Mohammed Alser, Joël Lindegger, Can Firtina, Nour Almadhoun, Haiyu Mao, Gagandeep Singh, Juan Gómez-Luna, Onur Mutlu

CoRR, 2022

Packaging, containerization, and virtualization of computational omics methods: Advances, challenges, and opportunities.

Mohammed Alser, Sharon Waymost, Ram Ayyala, Brendan Lawlor, Richard J. Abdill, Neha Rajkumar, Nathan LaPierre, Jaqueline J. Brito, Andre M. Ribeiro-dos-Santos, Can Firtina, Nour Almadhoun, Varuni Sarwal, Eleazar Eskin, Qiyang Hu, Derek Strong, Byoung-Do Kim, Malak S. Abedalthagafi, Onur Mutlu, Serghei Mangul

CoRR, 2022

GenStore: A High-Performance and Energy-Efficient In-Storage Computing System for Genome Sequence Analysis.

Nika Mansouri-Ghiasi, Jisung Park, Harun Mustafa, Jeremie S. Kim, Ataberk Olgun, Arvid Gollwitzer, Damla Senol Cali, Can Firtina, Haiyu Mao, Nour Almadhoun Alserr, Rachata Ausavarungnirun, Nandita Vijaykumar, Mohammed Alser, Onur Mutlu

CoRR, 2022

GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read Mapping.

Haiyu Mao, Mohammed Alser, Mohammad Sadrosadati, Can Firtina, Akanksha Baranwal, Damla Senol Cali, Aditya Manglik, Nour Almadhoun Alserr, Onur Mutlu

Proceedings of the 55th IEEE/ACM International Symposium on Microarchitecture, 2022

GenStore: In-Storage Filtering of Genomic Data for High-Performance and Energy-Efficient Genome Analysis.

Nika Mansouri-Ghiasi, Jisung Park, Harun Mustafa, Jeremie S. Kim, Ataberk Olgun, Arvid Gollwitzer, Damla Senol Cali, Can Firtina, Haiyu Mao, Nour Almadhoun Alserr, Rachata Ausavarungnirun, Nandita Vijaykumar, Mohammed Alser, Onur Mutlu

Proceedings of the IEEE Computer Society Annual Symposium on VLSI, 2022

SeGraM: a universal hardware accelerator for genomic sequence-to-graph and sequence-to-sequence mapping.

Damla Senol Cali, Konstantinos Kanellopoulos, Joël Lindegger, Zülal Bingöl, Gurpreet S. Kalsi, Ziyi Zuo, Can Firtina, Meryem Banu Cavlak, Jeremie S. Kim, Nika Mansouri-Ghiasi, Gagandeep Singh, Juan Gómez-Luna, Nour Almadhoun Alserr, Mohammed Alser, Sreenivas Subramoney, Can Alkan, Saugata Ghose, Onur Mutlu

Proceedings of the ISCA '22: The 49th Annual International Symposium on Computer Architecture, New York, New York, USA, June 18, 2022

GenStore: a high-performance in-storage processing system for genome sequence analysis.

Nika Mansouri-Ghiasi, Jisung Park, Harun Mustafa, Jeremie S. Kim, Ataberk Olgun, Arvid Gollwitzer, Damla Senol Cali, Can Firtina, Haiyu Mao, Nour Almadhoun Alserr, Rachata Ausavarungnirun, Nandita Vijaykumar, Mohammed Alser, Onur Mutlu

Proceedings of the ASPLOS '22: 27th ACM International Conference on Architectural Support for Programming Languages and Operating Systems, Lausanne, Switzerland, 28 February 2022, 2022

2021

GenShare: Sharing Accurate Differentially-Private Statistics for Genomic Datasets with Dependent Tuples.

Nour Almadhoun Alserr, Özgür Ulusoy, Erman Ayday, Onur Mutlu

CoRR, 2021

Near-Optimal Privacy-Utility Tradeoff in Genomic Studies Using Selective SNP Hiding.

Nour Almadhoun Alserr, Gulce Kale, Onur Mutlu, Öznur Tastan, Erman Ayday

CoRR, 2021

COVIDHunter: An Accurate, Flexible, and Environment-Aware Open-Source COVID-19 Outbreak Simulation Model.

Mohammed Alser, Jeremie S. Kim, Nour Almadhoun Alserr, Stefan W. Tell, Onur Mutlu

CoRR, 2021

2020

On the tradeoff between privacy and utility in genomic studies: Differential privacy under dependent tuples (Genomik çalışmalarda gizlilik ve verinin işe yararlılığı üzerine analiz: Bağımlı elemanlar altında diferansiyel gizlilik)

Nour Almadhoun Alserr

PhD thesis, 2020

Inference attacks against differentially private query results from genomic datasets including dependent tuples.

Nour Almadhoun, Erman Ayday, Özgür Ulusoy

Bioinform., 2020

Differential privacy under dependent tuples - the case of genomic privacy.

Nour Almadhoun, Erman Ayday, Özgür Ulusoy

Bioinform., 2020

2015

Can you Really Anonymize the Donors of Genomic Data in Today's Digital World?

Mohammed Alser, Nour Almadhoun, Azita Nouri, Can Alkan, Erman Ayday

Proceedings of the Data Privacy Management, and Security Assurance, 2015