Sarah Cohen Boulakia

According to our database, Sarah Cohen Boulakia authored at least 55 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2023

A unifying rank aggregation framework to suitably and efficiently aggregate any kind of rankings.

Pierre Andrieu, Sarah Cohen-Boulakia, Miguel Couceiro, Alain Denise, Adeline Pierrot

Int. J. Approx. Reason., November, 2023

Reprohackathons: promoting reproducibility in bioinformatics through training.

Thomas Cokelaer, Sarah Cohen-Boulakia, Frédéric Lemoine

Bioinform., 2023

Extraction d'informations sur les workflows scientifiques à partir de la littérature.

Clémence Sebe, Aurélie Névéol, Sarah Cohen-Boulakia, Alban Gaignard

Proceedings of the Extraction et Gestion des Connaissances, 2023

2022

FAIR ScientificWorkflows: Status, Challenges and Research Opportunities.

Sarah Cohen-Boulakia

Proceedings of the Extraction et Gestion des Connaissances, 2022

2021

Efficient, robust and effective rank aggregation for massive biological datasets.

Pierre Andrieu, Bryan Brancotte, Laurent Bulteau, Sarah Cohen-Boulakia, Alain Denise, Adeline Pierrot, Stéphane Vialette

Future Gener. Comput. Syst., 2021

A Coq formalization of data provenance.

Véronique Benzaken, Sarah Cohen-Boulakia, Evelyne Contejean, Chantal Keller, Rébecca Zucchini

Proceedings of the CPP '21: 10th ACM SIGPLAN International Conference on Certified Programs and Proofs, 2021

2020

FAIR Computational Workflows.

Carole A. Goble, Sarah Cohen-Boulakia, Stian Soiland-Reyes, Daniel Garijo, Yolanda Gil, Michael R. Crusoe, Kristian Peters, Daniel Schober

Data Intell., 2020

2019

NGPhylogeny.fr: new generation phylogenetic services for non-specialists.

Frédéric Lemoine, Damien Correia, Vincent Lefort, Olivia Doppelt-Azeroual, Fabien Mareuil, Sarah Cohen-Boulakia, Olivier Gascuel

Nucleic Acids Res., 2019

VersionClimber: Version Upgrades Without Tears.

Christophe Pradal, Sarah Cohen-Boulakia, Patrick Valduriez, Dennis E. Shasha, Konrad Hinsen, Matthew A. Turk

Comput. Sci. Eng., 2019

Reliability-Aware and Graph-Based Approach for Rank Aggregation of Biological Data.

Pierre Andrieu, Bryan Brancotte, Laurent Bulteau, Sarah Cohen-Boulakia, Alain Denise, Adeline Pierrot, Stéphane Vialette

Proceedings of the 15th International Conference on eScience, 2019

2018

Biological Metadata Management.

Zoé Lacroix, Cartik R. Kothari, Peter Mork, Mark D. Wilkinson, Sarah Cohen Boulakia

Proceedings of the Encyclopedia of Database Systems, Second Edition, 2018

Biological Resource Discovery.

Zoé Lacroix, Cartik R. Kothari, Peter Mork, Rami Rifaieh, Mark D. Wilkinson, Juliana Freire, Sarah Cohen Boulakia

Proceedings of the Encyclopedia of Database Systems, Second Edition, 2018

Provenance in Scientific Databases.

Sarah Cohen Boulakia, Wang-Chiew Tan

Proceedings of the Encyclopedia of Database Systems, Second Edition, 2018

Distributed Management of Scientific Workflows for High-Throughput Plant Phenotyping.

Christophe Pradal, Sarah Cohen Boulakia, Gaëtan Heidsieck, Esther Pacitti, François Tardieu, Patrick Valduriez

ERCIM News, 2018

Designing Scientific SPARQL Queries Using Autocompletion by Snippets.

Karima Rafes, Serge Abiteboul, Sarah Cohen Boulakia, Bastien Rance

Proceedings of the 14th IEEE International Conference on e-Science, 2018

2017

InfraPhenoGrid: A scientific workflow infrastructure for plant phenomics on the Grid.

Christophe Pradal, Simon Artzet, Jérôme Chopard, Dimitri Dupuis, Christian Fournier, Michael Mielewczik, Vincent Nègre, Pascal Neveu, Didier Parigot, Patrick Valduriez, Sarah Cohen Boulakia

Future Gener. Comput. Syst., 2017

Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities.

Sarah Cohen Boulakia, Khalid Belhajjame, Olivier Collin, Jérôme Chopard, Christine Froidevaux, Alban Gaignard, Konrad Hinsen, Pierre Larmande, Yvan Le Bras, Frédéric Lemoine, Fabien Mareuil, Hervé Ménager, Christophe Pradal, Christophe Blanchet

Future Gener. Comput. Syst., 2017

2016

Effective and efficient similarity search in scientific workflow repositories.

Johannes Starlinger, Sarah Cohen Boulakia, Sanjeev Khanna, Susan B. Davidson, Ulf Leser

Future Gener. Comput. Syst., 2016

Représentation systémique multi-échelle des processus biologiques de la bactérie.

Vincent Henry, Arnaud Ferré, Christine Froidevaux, Anne Goelzer, Vincent Fromion, Sarah Cohen Boulakia, Sandra Dérozier, Marc Dinh, Ghislain Fiévet, Stephan Fischer, Jean-François Gibrat, Valentin Loux, Sabine Pérès

Proceedings of the IC 2016 : 27es Journées francophones d'Ingénierie des Connaissances (Proceedings of the 27th French Knowledge Engineering Conference), 2016

2015

Rank aggregation with ties: Experiments and Analysis.

Bryan Brancotte, Bo Yang, Guillaume Blin, Sarah Cohen Boulakia, Alain Denise, Sylvie Hamel

Proc. VLDB Endow., 2015

OpenAlea: scientific workflows combining data analysis and simulation.

Christophe Pradal, Christian Fournier, Patrick Valduriez, Sarah Cohen Boulakia

Proceedings of the 27th International Conference on Scientific and Statistical Database Management, 2015

Reviewing 741 patients records in two hours with FASTVISU.

Jean-Baptiste Escudié, Anne-Sophie Jannot, Eric Zapletal, Sarah Cohen Boulakia, Georgia Malamut, Anita Burgun, Bastien Rance

Proceedings of the AMIA 2015, 2015

Data Integration in the Life Sciences: Scientific Workflows, Provenance, and Ranking.

Sarah Cohen Boulakia

, 2015

2014

Similarity Search for Scientific Workflows.

Johannes Starlinger, Bryan Brancotte, Sarah Cohen Boulakia, Ulf Leser

Proc. VLDB Endow., 2014

Distilling structure in Taverna scientific workflows: a refactoring approach.

Sarah Cohen Boulakia, Jiuqiang Chen, Paolo Missier, Carole A. Goble, Alan R. Williams, Christine Froidevaux

BMC Bioinform., 2014

DistillFlow: removing redundancy in scientific workflows.

Jiuqiang Chen, Sarah Cohen Boulakia, Christine Froidevaux, Carole A. Goble, Paolo Missier, Alan R. Williams

Proceedings of the Conference on Scientific and Statistical Database Management, 2014

Layer Decomposition: An Effective Structure-Based Approach for Scientific Workflow Similarity.

Johannes Starlinger, Sarah Cohen Boulakia, Sanjeev Khanna, Susan B. Davidson, Ulf Leser

Proceedings of the 10th IEEE International Conference on e-Science, 2014

ConQuR-Bio: Consensus Ranking with Query Reformulation for Biological Data.

Bryan Brancotte, Bastien Rance, Alain Denise, Sarah Cohen Boulakia

Proceedings of the Data Integration in the Life Sciences - 10th International Conference, 2014

2012

(Re)Use in Public Scientific Workflow Repositories.

Johannes Starlinger, Sarah Cohen Boulakia, Ulf Leser

Proceedings of the Scientific and Statistical Database Management, 2012

Scientific workflow rewriting while preserving provenance.

Sarah Cohen Boulakia, Christine Froidevaux, Jiuqiang Chen

Proceedings of the 8th IEEE International Conference on E-Science, 2012

2011

Search, adapt, and reuse: the future of scientific workflows.

Sarah Cohen Boulakia, Ulf Leser

SIGMOD Rec., 2011

Gene List significance at-a-glance with GeneValorization.

Bryan Brancotte, Anne Biton, Isabelle Bernard-Pierrot, François Radvanyi, Fabien Reyal, Sarah Cohen Boulakia

Bioinform., 2011

Using Medians to Generate Consensus Rankings for Biological Data.

Sarah Cohen Boulakia, Alain Denise, Sylvie Hamel

Proceedings of the Scientific and Statistical Database Management, 2011

Next generation data integration for Life Sciences.

Sarah Cohen Boulakia, Ulf Leser

Proceedings of the 27th International Conference on Data Engineering, 2011

2009

Biological Metadata Management.

Zoé Lacroix, Cartik R. Kothari, Peter Mork, Mark D. Wilkinson, Sarah Cohen Boulakia

Proceedings of the Encyclopedia of Database Systems, 2009

Biological Resource Discovery.

Zoé Lacroix, Cartik R. Kothari, Peter Mork, Rami Rifaieh, Mark D. Wilkinson, Juliana Freire, Sarah Cohen Boulakia

Proceedings of the Encyclopedia of Database Systems, 2009

Provenance in Scientific Databases.

Sarah Cohen Boulakia, Wang Chiew Tan

Proceedings of the Encyclopedia of Database Systems, 2009

PDiffView: Viewing the Difference in Provenance of Workflow Results.

Zhuowei Bao, Sarah Cohen Boulakia, Susan B. Davidson, Pierrick Girard

Proc. VLDB Endow., 2009

BioBrowsing: Making the Most of the Data Available in Entrez.

Sarah Cohen Boulakia, Kevin Masini

Proceedings of the Scientific and Statistical Database Management, 2009

On User Views in Scientific Workflow Systems.

Susan B. Davidson, Yi Chen, Peng Sun, Sarah Cohen Boulakia

Proceedings of the First International Workshop on the role of Semantic Web in Provenance Management (SWPM 2009), 2009

Differencing Provenance in Scientific Workflows.

Zhuowei Bao, Sarah Cohen Boulakia, Susan B. Davidson, Anat Eyal, Sanjeev Khanna

Proceedings of the 25th International Conference on Data Engineering, 2009

2008

Special Issue: The First Provenance Challenge.

Luc Moreau, Bertram Ludäscher, Ilkay Altintas, Roger S. Barga, Shawn Bowers, Steven P. Callahan, George Chin Jr., Ben Clifford, Shirley Cohen, Sarah Cohen Boulakia, Susan B. Davidson, Ewa Deelman, Luciano A. Digiampietri, Ian T. Foster, Juliana Freire, James Frew, Joe Futrelle, Tara Gibson, Yolanda Gil, Carole A. Goble, Jennifer Golbeck, Paul Groth, David A. Holland, Sheng Jiang, Jihie Kim, David Koop, Ales Krenek, Timothy M. McPhillips, Gaurang Mehta, Simon Miles, Dominic Metzger, Steve Munroe, Jim Myers, Beth Plale, Norbert Podhorszki, Varun Ratnakar, Emanuele Santos, Carlos Eduardo Scheidegger, Karen Schuchardt, Margo I. Seltzer, Yogesh L. Simmhan, Cláudio T. Silva, Peter Slaughter, Eric G. Stephan, Robert Stevens, Daniele Turi, Huy T. Vo, Michael Wilde, Jun Zhao, Yong Zhao

Concurr. Comput. Pract. Exp., 2008

Addressing the provenance challenge using ZOOM.

Sarah Cohen Boulakia, Olivier Biton, Shirley Cohen, Susan B. Davidson

Concurr. Comput. Pract. Exp., 2008

Review of the selected proceedings of the Fifth International Workshop on Data Integration in the Life Sciences 2008.

Amos Bairoch, Sarah Cohen Boulakia, Christine Froidevaux

BMC Bioinform., 2008

Querying and Managing Provenance through User Views in Scientific Workflows.

Olivier Biton, Sarah Cohen Boulakia, Susan B. Davidson, Carmem S. Hara

Proceedings of the 24th International Conference on Data Engineering, 2008

2007

Provenance in Scientific Workflow Systems.

Susan B. Davidson, Sarah Cohen Boulakia, Anat Eyal, Bertram Ludäscher, Timothy M. McPhillips, Shawn Bowers, Manish Kumar Anand, Juliana Freire

IEEE Data Eng. Bull., 2007

BioGuideSRS: querying multiple sources with a user-centric perspective.

Sarah Cohen Boulakia, Olivier Biton, Susan B. Davidson, Christine Froidevaux

Bioinform., 2007

Zoom*UserViews: Querying Relevant Provenance in Workflow Systems.

Olivier Biton, Sarah Cohen Boulakia, Susan B. Davidson

Proceedings of the 33rd International Conference on Very Large Data Bases, 2007

2006

Path-based Systems to Guide Scientists in the Maze of Biological Data Sources.

Sarah Cohen Boulakia, Susan B. Davidson, Christine Froidevaux, Zoé Lacroix, Maria-Esther Vidal

J. Bioinform. Comput. Biol., 2006

Selecting Biological Data Sources and Tools with XPR, a Path Language for RDF.

Sarah Cohen Boulakia, Christine Froidevaux, Emmanuel Pietriga

Proceedings of the Biocomputing 2006, 2006

Towards a Model of Provenance and User Views in Scientific Workflows.

Shirley Cohen, Sarah Cohen Boulakia, Susan B. Davidson

Proceedings of the Data Integration in the Life Sciences, Third International Workshop, 2006

2005

A User-Centric Framework for Accessing Biological Sources and Tools.

Sarah Cohen Boulakia, Susan B. Davidson, Christine Froidevaux

Proceedings of the Data Integration in the Life Sciences, Second InternationalWorkshop, 2005

2004

Selecting biomedical data sources according to user preferences.

Sarah Cohen Boulakia, Séverine Lair, Nicolas Stransky, Stéphane Graziani, François Radvanyi, Emmanuel Barillot, Christine Froidevaux

Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

Interrogation de sources biomédicales : prise en compte des préférences de l'utilisateur.

Sarah Cohen Boulakia, Christine Froidevaux, Séverine Lair

Proceedings of the Extraction et gestion des connaissances (EGC'2004), 2004

Preferences for Queries in a Mediator Approach.

Alain Bidault, Sarah Cohen Boulakia, Christine Froidevaux

Proceedings of the 16th Eureopean Conference on Artificial Intelligence, 2004