Tieliu Shi

According to our database, Tieliu Shi authored at least 23 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Gene expression variability across cells and species shapes the relationship between renal resident macrophages and infiltrated macrophages.

Xiangjun Ji, Junwei Cai, Lixin Liang, Tieliu Shi, Jinghua Liu

BMC Bioinform., December, 2023

PLM-ARG: antibiotic resistance gene identification using a pretrained protein language model.

Jun Wu, Jian Ouyang, Haipeng Qing, Jiajia Zhou, Ruth Roberts, Rania Siam, Lan Wang, Weida Tong, Zhichao Liu, Tieliu Shi

Bioinform., November, 2023

HiFun: homology independent protein function prediction by a novel protein-language self-attention model.

Jun Wu, Haipeng Qing, Jian Ouyang, Jiajia Zhou, Zihao Gao, Christopher E. Mason, Zhichao Liu, Tieliu Shi

Briefings Bioinform., September, 2023

2021

AtMAD: Arabidopsis thaliana multi-omics association database.

Yiheng Lan, Ruikun Sun, Jian Ouyang, Wubing Ding, Min-Jun Kim, Jun Wu, Yuhua Li, Tieliu Shi

Nucleic Acids Res., 2021

2020

DNMIVD: DNA methylation interactive visualization database.

Wubin Ding, Jiwei Chen, Guoshuang Feng, Geng Chen, Jun Wu, Yongli Guo, Xin Ni, Tieliu Shi

Nucleic Acids Res., 2020

2018

PedAM: a database for Pediatric Disease Annotation and Medicine.

Jinmeng Jia, Zhongxin An, Yue Ming, Yongli Guo, Wei Li, Xin Li, Yunxiang Liang, Dongming Guo, Jun Tai, Geng Chen, Yaqiong Jin, Zhimei Liu, Xin Ni, Tieliu Shi

Nucleic Acids Res., 2018

eRAM: encyclopedia of rare disease annotations for precision medicine.

Jinmeng Jia, Zhongxin An, Yue Ming, Yongli Guo, Wei Li, Yunxiang Liang, Dongming Guo, Xin Li, Jun Tai, Geng Chen, Yaqiong Jin, Zhimei Liu, Xin Ni, Tieliu Shi

Nucleic Acids Res., 2018

TCMID 2.0: a comprehensive resource for TCM.

Lin Huang, Duoli Xie, Yiran Yu, Huanlong Liu, Yan Shi, Tieliu Shi, Chengping Wen

Nucleic Acids Res., 2018

2017

AtPID: a genome-scale resource for genotype-phenotype associations in Arabidopsis.

Qi Lv, Yiheng Lan, Yan Shi, Huan Wang, Xia Pan, Peng Li, Tieliu Shi

Nucleic Acids Res., 2017

dbSAP: single amino-acid polymorphism database for protein variation detection.

Ruifang Cao, Yan Shi, Shuangguan Chen, Yimin Ma, Jiajun Chen, Juan Yang, Geng Chen, Tieliu Shi

Nucleic Acids Res., 2017

2016

Ligand cluster-based protein network and ePlatton, a multi-target ligand finder.

Yu Du, Tieliu Shi

J. Cheminformatics, 2016

2015

PubAngioGen: a database and knowledge for angiogenesis and related diseases.

Peng Li, Yongrui Liu, Huan Wang, Yuan He, Xue Wang, Yundong He, Fang Lv, Huaqing Chen, Xiufeng Pang, Mingyao Liu, Tieliu Shi, Zhengfang Yi

Nucleic Acids Res., 2015

2014

Integrating multiple resources to identify specific transcriptional cooperativity with a Bayesian approach.

Pengzhan Hu, Zhongchao Shen, Haibo Tu, Li Zhang, Tieliu Shi

Bioinform., 2014

2013

TCMID: traditional Chinese medicine integrative database for herb molecular mechanism analysis.

Ruichao Xue, Zhao Fang, Meixia Zhang, Zhenghui Yi, Chengping Wen, Tieliu Shi

Nucleic Acids Res., 2013

2011

AtPID: the overall hierarchical functional protein interaction network interface and analytic platform for <i>Arabidopsis</i>.

Peng Li, Weidong Zang, Yuhua Li, Feng Xu, Jigang Wang, Tieliu Shi

Nucleic Acids Res., 2011

Exploring virus relationships based on virus-host protein-protein interaction network.

Feng Xu, Chen Zhao, Yuhua Li, Jiang Li, Youping Deng, Tieliu Shi

BMC Syst. Biol., 2011

A transcriptional dynamic network during Arabidopsis thaliana pollen development.

Jigang Wang, Xiaojie Qiu, Yuhua Li, Youping Deng, Tieliu Shi

BMC Syst. Biol., 2011

2010

HLungDB: an integrated database of human lung cancer research.

Lishan Wang, Yuanyuan Xiong, Yihua Sun, Zhaoyuan Fang, Li Li, Hongbin Ji, Tieliu Shi

Nucleic Acids Res., 2010

2008

AtPID: <i>Arabidopsis thaliana</i> protein interactome database - an integrative platform for plant systems biology.

Jian Cui, Peng Li, Guang Li, Feng Xu, Chen Zhao, Yuhua Li, Zhongnan Yang, Guang Wang, Qingbo Yu, Yi-Xue Li, Tieliu Shi

Nucleic Acids Res., 2008

2007

InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes.

Jingchun Sun, Yan Sun, Guohui Ding, Qi Liu, Chuan Wang, Youyu He, Tieliu Shi, Yixue Li, Zhongming Zhao

BMC Bioinform., 2007

2006

Insights into the Coupling of Duplication Events and Macroevolution from an Age Profile of Animal Transmembrane Gene Families.

Guohui Ding, Jiuhong Kang, Qi Liu, Tieliu Shi, Gang Pei, Yixue Li

PLoS Comput. Biol., 2006

Demonstration of two novel methods for predicting functional siRNA efficiency.

Peilin Jia, Tieliu Shi, Yudong Cai, Yixue Li

BMC Bioinform., 2006

2005

Refined phylogenetic profiles method for predicting protein-protein interactions.

Jingchun Sun, Jinlin Xu, Zhen Liu, Qi Liu, Aimin Zhao, Tieliu Shi, Yi-Xue Li

Bioinform., 2005