Robert Patro

According to our database1, Robert Patro
  • authored at least 33 papers between 2009 and 2018.
  • has a "Dijkstra number"2 of four.

Timeline

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In proceedings 
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Links

On csauthors.net:

Bibliography

2018
Squeakr: an exact and approximate k-mer counting system.
Bioinformatics, 2018

A space and time-efficient index for the compacted colored de Bruijn graph.
Bioinformatics, 2018

2017
Improved data-driven likelihood factorizations for transcript abundance estimation.
Bioinformatics, 2017

Quark enables semi-reference-based compression of RNA-seq data.
Bioinformatics, 2017

deBGR: an efficient and near-exact representation of the weighted de Bruijn graph.
Bioinformatics, 2017

Rainbowfish: A Succinct Colored de Bruijn Graph Representation.
Proceedings of the 17th International Workshop on Algorithms in Bioinformatics, 2017

A General-Purpose Counting Filter: Making Every Bit Count.
Proceedings of the 2017 ACM International Conference on Management of Data, 2017

Rich Chromatin Structure Prediction from Hi-C Data.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016
Accurate, Fast and Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes.
CoRR, 2016

Efficient Index Maintenance Under Dynamic Genome Modification.
CoRR, 2016

A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin.
BMC Bioinformatics, 2016

RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes.
Bioinformatics, 2016

2015
Data-dependent bucketing improves reference-free compression of sequencing reads.
Bioinformatics, 2015

Reference-based compression of short-read sequences using path encoding.
Bioinformatics, 2015

Optimizing Read Reversals for Sequence Compression - (Extended Abstract).
Proceedings of the Algorithms in Bioinformatics - 15th International Workshop, 2015

2014
Identification of alternative topological domains in chromatin.
Algorithms for Molecular Biology, 2014

2013
Sailfish: Alignment-free Isoform Quantification from RNA-seq Reads using Lightweight Algorithms.
CoRR, 2013

Predicting protein interactions via parsimonious network history inference.
Bioinformatics, 2013

Resolving spatial inconsistencies in chromosome conformation measurements.
Algorithms for Molecular Biology, 2013

Multiscale Identification of Topological Domains in Chromatin.
Proceedings of the Algorithms in Bioinformatics - 13th International Workshop, 2013

Topological properties of chromosome conformation graphs reflect spatial proximities within chromatin.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
Computationally Comparing Biological Networks and Reconstructing Their Evolution.
PhD thesis, 2012

Global network alignment using multiscale spectral signatures.
Bioinformatics, 2012

Parsimonious reconstruction of network evolution.
Algorithms for Molecular Biology, 2012

Resolving Spatial Inconsistencies in Chromosome Conformation Data.
Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012

The missing models: a data-driven approach for learning how networks grow.
Proceedings of the 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2012

2011
A robust and rotationally invariant local surface descriptor with applications to non-local mesh processing.
Graphical Models, 2011

Social Snapshot: A System for Temporally Coupled Social Photography.
IEEE Computer Graphics and Applications, 2011

Parsimonious Reconstruction of Network Evolution.
Proceedings of the Algorithms in Bioinformatics - 11th International Workshop, 2011

Salient Frame Detection for Molecular Dynamics Simulations.
Proceedings of the Scientific Visualization: Interactions, Features, Metaphors, 2011

MDMap: A system for data-driven layout and exploration of molecular dynamics simulations.
Proceedings of the 2011 IEEE Symposium on Biological Data Visualization, 2011

2010
Saliency Guided Summarization of Molecular Dynamics Simulations.
Proceedings of the Scientific Visualization: Advanced Concepts, 2010

2009
Modeling and Visualization of Human Activities for Multicamera Networks.
EURASIP J. Image and Video Processing, 2009


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