Tianyu Cui

According to our database, Tianyu Cui authored at least 29 papers between 2017 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Digital remote monitoring for screening and early detection of urinary tract infections.

Alexander Capstick, Francesca Palermo, Kimberley Zakka, Nan Fletcher-Lloyd, Chloe Walsh, Tianyu Cui, Samaneh Kouchaki, Raphaella Jackson, Martin Tran, Michael Crone, Kirsten Jensen, Paul S. Freemont, Ravi Vaidyanathan, Magdalena Kolanko, Jessica True, Sarah Daniels, David Wingfield, Ramin Nilforooshan, Payam M. Barnaghi

npj Digit. Medicine, 2024

Risk Taxonomy, Mitigation, and Assessment Benchmarks of Large Language Model Systems.

Tianyu Cui, Yanling Wang, Chuanpu Fu, Yong Xiao, Sijia Li, Xinhao Deng, Yunpeng Liu, Qinglin Zhang, Ziyi Qiu, Peiyang Li, Zhixing Tan, Junwu Xiong, Xinyu Kong, Zujie Wen, Ke Xu, Qi Li

CoRR, 2024

2023

DELFMUT: duplex sequencing-oriented depth estimation model for stable detection of low-frequency mutations.

Guiying Wu, Mengmeng Song, Ke Wang, Tianyu Cui, Zicong Jiao, Liyan Ji, Xuan Gao, Jiayin Wang, Tao Liu, Xuefeng Xia, Huan Fang, Yanfang Guan, Xin Yi

Briefings Bioinform., September, 2023

LncReader: identification of dual functional long noncoding RNAs using a multi-head self-attention mechanism.

Tianyuan Liu, Bohao Zou, Manman He, Yongfei Hu, Yiying Dou, Tianyu Cui, Puwen Tan, Shaobin Li, Shuan Rao, Yan Huang, Sixi Liu, Kaican Cai, Dong Wang

Briefings Bioinform., January, 2023

Interaction Detection with Probabilistic Deep Learning for Genetics.

Tianyu Cui

PhD thesis, 2023

Two Sides of The Same Coin: Bridging Deep Equilibrium Models and Neural ODEs via Homotopy Continuation.

Shutong Ding, Tianyu Cui, Jingya Wang, Ye Shi

Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

Incorporating functional summary information in Bayesian neural networks using a Dirichlet process likelihood approach.

Vishnu Raj, Tianyu Cui, Markus Heinonen, Pekka Marttinen

Proceedings of the International Conference on Artificial Intelligence and Statistics, 2023

2022

RNAPhaSep: a resource of RNAs undergoing phase separation.

Haibo Zhu, Hao Fu, Tianyu Cui, Lin Ning, Huaguo Shao, Yehan Guo, Yanting Ke, Jiayi Zheng, Hongyan Lin, Xin Wu, Guanghao Liu, Jun He, Xin Han, Wenlin Li, Xiaoyang Zhao, Huasong Lu, Dong Wang, Kongfa Hu, Xiaopei Shen

Nucleic Acids Res., 2022

RNAInter v4.0: RNA interactome repository with redefined confidence scoring system and improved accessibility.

Juanjuan Kang, Qiang Tang, Jun He, Le Li, Nianling Yang, Shuiyan Yu, Mengyao Wang, Yuchen Zhang, Jiahao Lin, Tianyu Cui, Yongfei Hu, Puwen Tan, Jun Cheng, Hailong Zheng, Dong Wang, Xi Su, Wei Chen, Yan Huang

Nucleic Acids Res., 2022

RNALocate v2.0: an updated resource for RNA subcellular localization with increased coverage and annotation.

Tianyu Cui, Yiying Dou, Puwen Tan, Zhen Ni, Tianyuan Liu, Duolin Wang, Yan Huang, Kaican Cai, Xiaoyang Zhao, Dong Xu, Hao Lin, Dong Wang

Nucleic Acids Res., 2022

ViRBase v3.0: a virus and host ncRNA-associated interaction repository with increased coverage and annotation.

Jun Cheng, Yunqing Lin, Linfu Xu, Kechen Chen, Qi Li, Kaixin Xu, Lin Ning, Juanjuan Kang, Tianyu Cui, Yan Huang, Xiaoyang Zhao, Dong Wang, Yanhui Li, Xi Su, Bin Yang

Nucleic Acids Res., 2022

Look beyond labels: Incorporating functional summary information in Bayesian neural networks.

Vishnu Raj, Tianyu Cui, Markus Heinonen, Pekka Marttinen

CoRR, 2022

GALG: Linking Addresses in Tracking Ecosystem Using Graph Autoencoder with Link Generation.

Tianyu Cui, Gang Xiong, Chang Liu, Junzheng Shi, Peipei Fu, Gaopeng Gou

Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2022

Deconfounded Representation Similarity for Comparison of Neural Networks.

Tianyu Cui, Yogesh Kumar, Pekka Marttinen, Samuel Kaski

Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022

2021

MNDR v3.0: mammal ncRNA-disease repository with increased coverage and annotation.

Lin Ning, Tianyu Cui, Boyang Zheng, Nuo Wang, Jiaxin Luo, Beilei Yang, Mengze Du, Jun Cheng, Yiying Dou, Dong Wang

Nucleic Acids Res., 2021

cncRNAdb: a manually curated resource of experimentally supported RNAs with both protein-coding and noncoding function.

Yan Huang, Jing Wang, Yue Zhao, Huafeng Wang, Tianyuan Liu, Yuhe Li, Tianyu Cui, Weiyi Li, Yige Feng, Jiaxin Luo, Jiaqi Gong, Lin Ning, Yong Zhang, Dong Wang, Yang Zhang

Nucleic Acids Res., 2021

Assessing the Attraction of Cities on Venture Capital From a Scaling Law Perspective.

Ruiqi Li, Lingyun Lu, Tianyu Cui, Weiwei Gu, Shaodong Ma, Gang Xu, Harry Eugene Stanley

IEEE Access, 2021

SiamHAN: IPv6 Address Correlation Attacks on TLS Encrypted Traffic via Siamese Heterogeneous Graph Attention Network.

Tianyu Cui, Gaopeng Gou, Gang Xiong, Zhen Li, Mingxin Cui, Chang Liu

Proceedings of the 30th USENIX Security Symposium, 2021

6GAN: IPv6 Multi-Pattern Target Generation via Generative Adversarial Nets with Reinforcement Learning.

Tianyu Cui, Gaopeng Gou, Gang Xiong, Chang Liu, Peipei Fu, Zhen Li

Proceedings of the 40th IEEE Conference on Computer Communications, 2021

2020

RNAInter in 2020: RNA interactome repository with increased coverage and annotation.

Yunqing Lin, Tianyuan Liu, Tianyu Cui, Zhao Wang, Yuncong Zhang, Puwen Tan, Yan Huang, Jia Yu, Dong Wang

Nucleic Acids Res., 2020

Informative Gaussian Scale Mixture Priors for Bayesian Neural Networks.

Tianyu Cui, Aki S. Havulinna, Pekka Marttinen, Samuel Kaski

CoRR, 2020

6VecLM: Language Modeling in Vector Space for IPv6 Target Generation.

Tianyu Cui, Gang Xiong, Gaopeng Gou, Junzheng Shi, Wei Xia

Proceedings of the Machine Learning and Knowledge Discovery in Databases: Applied Data Science Track, 2020

6GCVAE: Gated Convolutional Variational Autoencoder for IPv6 Target Generation.

Tianyu Cui, Gaopeng Gou, Gang Xiong

Proceedings of the Advances in Knowledge Discovery and Data Mining, 2020

MTLH: Video QoE Monitoring for Encrypted Traffic via Multi-Task Learning with Hierarchy.

Lei Xu, Gang Xiong, Gaopeng Gou, Jie Chen, Tianyu Cui, Tianyi Shan

Proceedings of the 22nd IEEE International Conference on High Performance Computing and Communications; 18th IEEE International Conference on Smart City; 6th IEEE International Conference on Data Science and Systems, 2020

Learning Global Pairwise Interactions with Bayesian Neural Networks.

Tianyu Cui, Pekka Marttinen, Samuel Kaski

Proceedings of the ECAI 2020 - 24th European Conference on Artificial Intelligence, 29 August-8 September 2020, Santiago de Compostela, Spain, August 29 - September 8, 2020, 2020

2019

Recovering Pairwise Interactions Using Neural Networks.

Tianyu Cui, Pekka Marttinen, Samuel Kaski

CoRR, 2019

A Comprehensive Study of Accelerating IPv6 Deployment.

Tianyu Cui, Chang Liu, Gaopeng Gou, Junzheng Shi, Gang Xiong

Proceedings of the 38th IEEE International Performance Computing and Communications Conference, 2019

2018

MNDR v2.0: an updated resource of ncRNA-disease associations in mammals.

Tianyu Cui, Lin Zhang, Yan Huang, Ying Yi, Puwen Tan, Yue Zhao, Yongfei Hu, Liyan Xu, Enmin Li, Dong Wang

Nucleic Acids Res., 2018

2017

RAID v2.0: an updated resource of RNA-associated interactions across organisms.

Ying Yi, Yue Zhao, Chunhua Li, Lin Zhang, Huiying Huang, Yana Li, Lanlan Liu, Ping Hou, Tianyu Cui, Puwen Tan, Yongfei Hu, Ting Zhang, Yan Huang, Xiaobo Li, Jia Yu, Dong Wang

Nucleic Acids Res., 2017