Jiayin Wang

Orcid: 0000-0002-3862-6557

Affiliations:
  • Xi'an Jiaotong University, School of Computer Science and Technology, Xi'an, China
  • Washington University in St. Louis, Genome Institute, St Louis, MO, USA (2013 - 2015)
  • University of Connecticut, Storrs, CT, USA (PhD 2013)


According to our database1, Jiayin Wang authored at least 77 papers between 2010 and 2026.

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Timeline

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Bibliography

2026
Do Papers Match Code? A Benchmark and Framework for Paper-Code Consistency Detection in Bioinformatics Software.
CoRR, March, 2026

Reaching Software Quality for Bioinformatics Applications: How Far Are We?
IEEE Trans. Software Eng., February, 2026

UF-CDDFM: A unified framework for code defect detection using multi-modal inputs and few-shot learning.
Inf. Softw. Technol., 2026

PScnv: personalized self-normalizing CNV detection with a hierarchical multi-phase framework.
Bioinform., 2026

Making Every Head Count: Sparse Attention Without the Speed-Performance Trade-off.
Proceedings of the Fortieth AAAI Conference on Artificial Intelligence, 2026

Mosaic Pruning: A Hierarchical Framework for Generalizable Pruning of Mixture-of-Experts Models.
Proceedings of the Fortieth AAAI Conference on Artificial Intelligence, 2026

2025
TMBclaw: tumor clone-aware graph learning improves immunotherapy response prediction across heterogeneous cohorts.
Briefings Bioinform., November, 2025

BioWorkflow: Retrieving comprehensive bioinformatics workflows from publications.
Briefings Bioinform., November, 2025

TMBquant: an explainable AI-powered caller advancing tumor mutation burden quantification across heterogeneous samples.
Briefings Bioinform., September, 2025

EMcnv: enhancing CNV detection performance through ensemble strategies with heterogeneous meta-graph neural networks.
Briefings Bioinform., March, 2025

THOR: a TMB heterogeneity-adaptive optimization model predicts immunotherapy response using clonal genomic features in group-structured data.
Briefings Bioinform., January, 2025

MRDtarget: A heuristic Gaussian approach for optimizing targeted capture regions to enhance Minimal Residual Disease detection.
PLoS Comput. Biol., 2025

Learning multi-behavior user intent for session-based recommendation.
Expert Syst. Appl., 2025

Multi-agent large language models as evolutionary optimizers for scheduling optimization.
Comput. Ind. Eng., 2025

ZIPcnv: accurate and efficient inference of copy number variations from shallow whole-genome sequencing.
Bioinform., 2025

MRDagent: iterative and adaptive parameter optimization for stable ctDNA-based MRD detection in heterogeneous samples.
Bioinform., 2025

PangenomeX: a graph convolutional network-based pangenome framework for unbiased population-scale genomic variation analysis.
Briefings Bioinform., 2025

MRDadaptis: self-adaptive parameter configuration enhances minimal residual disease detection in heterogeneous ctDNA samples.
Briefings Bioinform., 2025

Efficient Integration of ASR with Large Language Models to Enhance Video Search at Scale.
Proceedings of the Companion Proceedings of the ACM on Web Conference 2025, 2025

Cross-Project Defect Prediction Based on Feature Fusion and Local Domain Adaptation.
Proceedings of the 32nd Asia-Pacific Software Engineering Conference, 2025

Multi-Label Ranking Loss Minimization for Matrix Completion.
Proceedings of the Thirty-Ninth AAAI Conference on Artificial Intelligence, 2025

2024
TCSR: Self-attention with time and category for session-based recommendation.
Comput. Intell., October, 2024

Dual-channel graph contrastive learning for multi-label classification with label-specific features and label correlations.
Neural Comput. Appl., August, 2024

NIPT-PG: empowering non-invasive prenatal testing to learn from population genomics through an incremental pan-genomic approach.
Briefings Bioinform., July, 2024

TMBstable: a variant caller controls performance variation across heterogeneous sequencing samples.
Briefings Bioinform., May, 2024

A risk-adjusted exponentially weighted moving average control chart for detection of the scale parameter in surgical quality monitoring.
Qual. Reliab. Eng. Int., March, 2024

A novel instance-based method for cross-project just-in-time defect prediction.
Softw. Pract. Exp., 2024

A ranking-based problem transformation method for weakly supervised multi-label learning.
Pattern Recognit., 2024

scMSI: Accurately inferring the sub-clonal Micro-Satellite status by an integrated deconvolution model on length spectrum.
PLoS Comput. Biol., 2024

Graph-enhanced and collaborative attention networks for session-based recommendation.
Knowl. Based Syst., 2024

Stacked co-training for semi-supervised multi-label learning.
Inf. Sci., 2024

Classifier chain-based monitoring method for multivariate surgical outcomes.
Comput. Ind. Eng., 2024

Enhancing MET Copy Number Estimation by Factoring in Tumor Purity and Variant Types.
Proceedings of the Bioinformatics and Biomedical Engineering, 2024

Label-Specific Multi-label Classification with Entropy Guided Clustering.
Proceedings of the Pattern Recognition - 27th International Conference, 2024

An Enhanced Batch Query Architecture in Real-time Recommendation.
Proceedings of the 33rd ACM International Conference on Information and Knowledge Management, 2024

Correction of Read Biases Induced by Complex Reference Genome Regions for Improving Copy Number Variation Detection Using a Gaussian Mixture Model.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

Enabling Adaptive CNV Detection through A Novel Predictive Control Framework.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

RMComBat: A Batch Effect Correction Algorithm for Repeated Measurement Sequencing Data to Prevent Overcorrection.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

LMR-EWMA: A LASSO-based Multivariate Residual Control Chart for Monitoring Rare Health-Related Events.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

Enhancing Dental Implant Risk Prediction with an Interpretable Multi-Instance Learning Model.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

An Enhanced Multiple Correction Method with Limited Independent Effective SNPs.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

Multi-Objective Policy Monitoring Method for Epidemic Control.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

2023
SCR-CUSUM: An illness-death semi-Markov model-based risk-adjusted CUSUM for semi-competing risk data monitoring.
Comput. Ind. Eng., October, 2023

Automated machine learning with dynamic ensemble selection.
Appl. Intell., October, 2023

DELFMUT: duplex sequencing-oriented depth estimation model for stable detection of low-frequency mutations.
Briefings Bioinform., September, 2023

Scheduling on proportionate flow shop with job rejection and common due date assignment.
Comput. Ind. Eng., July, 2023

Dynamic ensemble learning for multi-label classification.
Inf. Sci., April, 2023

Generalized likelihood ratio based risk-adjusted control chart for zero-inflated Poisson process.
Qual. Reliab. Eng. Int., February, 2023

A Statistical Explainable Learning Model Optimizing Co-localization of Multidimensional Positivity Thresholds in Immunotherapy Decision-Supporting.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

A Control Chart Method for Simultaneously Monitoring the Average Level and Stability of Surgical Quality.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

AdaBoost.C2: Boosting Classifiers Chains for Multi-Label Classification.
Proceedings of the Thirty-Seventh AAAI Conference on Artificial Intelligence, 2023

2022
Residuals based EWMA control charts with risk adjustments for zero-inflated Poisson models.
Qual. Reliab. Eng. Int., 2022

PEcnv: accurate and efficient detection of copy number variations of various lengths.
Briefings Bioinform., 2022

2021
Automatic Recommendation of a Distance Measure for Clustering Algorithms.
ACM Trans. Knowl. Discov. Data, 2021

Risk-adjusted zero-inflated Poisson CUSUM charts for monitoring influenza surveillance data.
BMC Medical Informatics Decis. Mak., 2021

A non-linear ensemble model-based surgical risk calculator for mixed data from multiple surgical fields.
BMC Medical Informatics Decis. Mak., 2021

Ensemble of ML-KNN for classification algorithm recommendation.
Knowl. Based Syst., 2021

A risk-adjusted approach to monitoring surgery for survival outcomes based on a weighted score test.
Comput. Ind. Eng., 2021

A new multiple instance algorithm using structural information.
Proceedings of the IEEE International Conference on Data Mining, 2021

2020
Accurately estimating the length distributions of genomic micro-satellites by tumor purity deconvolution.
BMC Bioinform., March, 2020

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.
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Nat., 2020

A prognostic index based on a fourteen long non-coding RNA signature to predict the recurrence-free survival for muscle-invasive bladder cancer patients.
BMC Medical Informatics Decis. Mak., 2020

A machine learning framework for accurately recognizing circular RNAs for clinical decision-supporting.
BMC Medical Informatics Decis. Mak., 2020

SETE: Sequence-based Ensemble learning approach for TCR Epitope binding prediction.
Comput. Biol. Chem., 2020

A hybrid correcting method considering heterozygous variations by a comprehensive probabilistic model.
BMC Genom., 2020

SOAPTyping: an open-source and cross-platform tool for sequence-based typing for HLA class I and II alleles.
BMC Bioinform., 2020

2019
FilterLAP: Filtering False-positive Mutation Calls via a Label Propagation Framework.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

GSDcreator: An Efficient and Comprehensive Simulator for Genarating NGS Data with Population Genetic Information.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

An Artificial Fish Swarm Algorithm for Identifying Associations between Multiple Variants and Multiple Phenotypes.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2014
Chaotic image encryption based on circular substitution box and key stream buffer.
Signal Process. Image Commun., 2014

2013
A probabilistic method for identifying rare variants underlying complex traits.
BMC Genom., 2013

Admission control on multipath routing in 802.11-based wireless mesh networks.
Ad Hoc Networks, 2013

2012
An improved approach for accurate and efficient calling of structural variations with low-coverage sequence data.
BMC Bioinform., 2012

BOR/AC: Bandwidth-aware opportunistic routing with admission control in wireless mesh networks.
Proceedings of the IEEE INFOCOM 2012, Orlando, FL, USA, March 25-30, 2012, 2012

Rate-adaptive admission control for bandwidth assurance in multirate wireless mesh networks.
Proceedings of IEEE International Conference on Communications, 2012

2011
Identifying interacting SNPs with parallel fish-agent based logic regression.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

2010
Fast Computation of the Exact Hybridization Number of Two Phylogenetic Trees.
Proceedings of the Bioinformatics Research and Applications, 6th International Symposium, 2010


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