Won Kim

According to our database, Won Kim authored at least 45 papers between 2000 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval.

Qiao Jin, Won Kim, Qingyu Chen, Donald C. Comeau, Lana Yeganova, W. John Wilbur, Zhiyong Lu

Bioinform., October, 2023

BioCPT: Contrastive Pre-trained Transformers with Large-scale PubMed Search Logs for Zero-shot Biomedical Information Retrieval.

Qiao Jin, Won Kim, Qingyu Chen, Donald C. Comeau, Lana Yeganova, W. John Wilbur, Zhiyong Lu

CoRR, 2023

Opportunities and Challenges for ChatGPT and Large Language Models in Biomedicine and Health.

Shubo Tian, Qiao Jin, Lana Yeganova, Po-Ting Lai, Qingqing Zhu, Xiuying Chen, Yifan Yang, Qingyu Chen, Won Kim, Donald C. Comeau, Rezarta Islamaj, Aadit Kapoor, Xin Gao, Zhiyong Lu

CoRR, 2023

2022

Towards a unified search: Improving PubMed retrieval with full text.

Won Kim, Lana Yeganova, Donald C. Comeau, W. John Wilbur, Zhiyong Lu

J. Biomed. Informatics, 2022

2021

Measuring the relative importance of full text sections for information retrieval from scientific literature.

Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur, Zhiyong Lu

Proceedings of the 20th Workshop on Biomedical Language Processing, 2021

Improving PubMed Retrieval by Integrating Abstract and Full Text Search.

Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur, Zhiyong Lu

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Navigating the landscape of COVID-19 research through literature analysis: A bird's eye view.

Lana Yeganova, Rezarta Islamaj Dogan, Qingyu Chen, Robert Leaman, Alexis Allot, Chih-Hsuan Wei, Donald C. Comeau, Won Kim, Yifan Peng, W. John Wilbur, Zhiyong Lu

CoRR, 2020

2019

PDC - a probabilistic distributional clustering algorithm: a case study on suicide articles in PubMed.

Rezarta Islamaj Dogan, Lana Yeganova, Won Kim, Natalie Xie, W. John Wilbur

CoRR, 2019

2018

A Field Sensor: computing the composition and intent of PubMed queries.

Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur, Zhiyong Lu

Database J. Biol. Databases Curation, 2018

SingleCite: Towards an improved Single Citation Search in PubMed.

Lana Yeganova, Donald C. Comeau, Won Kim, W. John Wilbur, Zhiyong Lu

Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018, 2018

MeSH-based dataset for measuring the relevance of text retrieval.

Won Kim, Lana Yeganova, Donald C. Comeau, W. John Wilbur, Zhiyong Lu

Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018, 2018

2016

PubTermVariants: biomedical term variants and their use for PubMed search.

Lana Yeganova, Won Kim, Sun Kim, Rezarta Islamaj Dogan, Wanli Liu, Donald C. Comeau, Zhiyong Lu, W. John Wilbur

Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 2016

2014

Author name disambiguation for PubMed.

Wanli Liu, Rezarta Islamaj Dogan, Sun Kim, Donald C. Comeau, Won Kim, Lana Yeganova, Zhiyong Lu, W. John Wilbur

J. Assoc. Inf. Sci. Technol., 2014

Retro: concept-based clustering of biomedical topical sets.

Lana Yeganova, Won Kim, Sun Kim, W. John Wilbur

Bioinform., 2014

Stochastic Gradient Descent and the Prediction of MeSH for PubMed Records.

W. John Wilbur, Won Kim

Proceedings of the AMIA 2014, 2014

2012

Identifying well-formed biomedical phrases in MEDLINE® text.

Won Kim, Lana Yeganova, Donald C. Comeau, W. John Wilbur

J. Biomed. Informatics, 2012

Finding biomedical categories in Medline^®.

Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur

J. Biomed. Semant., 2012

Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information.

Sun Kim, Won Kim, Chih-Hsuan Wei, Zhiyong Lu, W. John Wilbur

Database J. Biol. Databases Curation, 2012

Classifying Gene Sentences in Biomedical Literature by Combining High-Precision Gene Identifiers.

Sun Kim, Won Kim, Donald C. Comeau, W. John Wilbur

Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

Automatic Identification of Key Concepts in Large PubMed Retrievals.

Lana Yeganova, Vahan Grigoryan, Won Kim, W. John Wilbur

Proceedings of the Information Retrieval and Knowledge Discovery in Biomedical Text, 2012

PROBE: Periodic Random Orbiter Algorithm for Machine Learning.

Larry H. Smith, Won Kim, W. John Wilbur

Proceedings of the Information Retrieval and Knowledge Discovery in Biomedical Text, 2012

2011

Improving a gold standard: treating human relevance judgments of MEDLINE document pairs.

W. John Wilbur, Won Kim

BMC Bioinform., 2011

Comparison of Two Methods for Finding Biomedical Categories in Medline.

Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur

Proceedings of the 10th International Conference on Machine Learning and Applications and Workshops, 2011

Text Mining Techniques for Leveraging Positively Labeled Data.

Lana Yeganova, Donald C. Comeau, Won Kim, W. John Wilbur

Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, 2011

2009

How to interpret PubMed queries and why it matters.

Lana Yeganova, Donald C. Comeau, Won Kim, W. John Wilbur

J. Assoc. Inf. Sci. Technol., 2009

Viewpoint Paper: Evaluating Relevance Ranking Strategies for MEDLINE Retrieval.

Zhiyong Lu, Won Kim, W. John Wilbur

J. Am. Medical Informatics Assoc., 2009

The ineffectiveness of within-document term frequency in text classification.

W. John Wilbur, Won Kim

Inf. Retr., 2009

Evaluation of query expansion using MeSH in PubMed.

Zhiyong Lu, Won Kim, W. John Wilbur

Inf. Retr., 2009

Exploring Two Biomedical Text Genres for Disease Recognition.

Aurélie Névéol, Won Kim, W. John Wilbur, Zhiyong Lu

Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, 2009

2008

Research Paper: Optimal Training Sets for Bayesian Prediction of MeSH^® Assignment.

Sunghwan Sohn, Won Kim, Donald C. Comeau, W. John Wilbur

J. Am. Medical Informatics Assoc., 2008

Abbreviation definition identification based on automatic precision estimates.

Sunghwan Sohn, Donald C. Comeau, Won Kim, W. John Wilbur

BMC Bioinform., 2008

Evaluating Relevance Ranking Strategies for MEDLINE Retrieval.

Zhiyong Lu, Won Kim, W. John Wilbur

Proceedings of the AMIA 2008, 2008

2007

Using MEDLINE as a knowledge source for disambiguating abbreviations and acronyms in full-text biomedical journal articles.

Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W. John Wilbur

J. Biomed. Informatics, 2007

2006

A large scale, corpus-based approach for automatically disambiguating biomedical abbreviations.

Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W. John Wilbur

ACM Trans. Inf. Syst., 2006

Spelling correction in the PubMed search engine.

W. John Wilbur, Won Kim, Natalie Xie

Inf. Retr., 2006

2005

The Synergy Between PAV and AdaBoost.

W. John Wilbur, Lana Yeganova, Won Kim

Mach. Learn., 2005

A Strategy for Assigning New Concepts in the MEDLINE Database.

Won Kim, W. John Wilbur

Proceedings of the AMIA 2005, 2005

2004

Knowledge-Intensive and Statistical Approaches to the Retrieval and Annotation of Genomics MEDLINE Citations.

Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Won Kim, Russell F. Loane, James G. Mork, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Natalie Xie, Dina Demner-Fushman, Hongfang Liu

Proceedings of the Thirteenth Text REtrieval Conference, 2004

Using MEDLINE as a Knowledge Source for Disambiguating Abbreviations in Full-Text Biomedical Journal Articles.

Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W. John Wilbur

Proceedings of the 17th IEEE Symposium on Computer-Based Medical Systems (CBMS 2004), 2004

2003

The Dimensions of Indexing.

W. John Wilbur, Won Kim

Proceedings of the AMIA 2003, 2003

2002

DNA splice site detection: a comparison of specific and general methods.

Won Kim, W. John Wilbur

Proceedings of the AMIA 2002, 2002

2001

Corpus-based statistical screening for content-bearing terms.

Won Kim, W. John Wilbur

J. Assoc. Inf. Sci. Technol., 2001

Amino Acid Residue Environments and Predictions of Residue Type.

Won Kim, W. John Wilbur

Comput. Chem., 2001

Automatic MeSH term assignment and quality assessment.

Won Kim, Alan R. Aronson, W. John Wilbur

Proceedings of the AMIA 2001, 2001

2000

Research Paper: Corpus-based Statistical Screening for Phrase Identification.

Won Kim, W. John Wilbur

J. Am. Medical Informatics Assoc., 2000