Rezarta Islamaj Dogan
Orcid: 0000-0001-5651-1860
According to our database1,
Rezarta Islamaj Dogan
authored at least 53 papers
between 2006 and 2023.
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Bibliography
2023
Bioinform., October, 2023
Comprehensively identifying Long Covid articles with human-in-the-loop machine learning.
Patterns, January, 2023
Opportunities and Challenges for ChatGPT and Large Language Models in Biomedicine and Health.
CoRR, 2023
Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII.
Database J. Biol. Databases Curation, 2023
2022
Comprehensive identification of Long Covid articles with human-in-the-loop machine learning.
CoRR, 2022
Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.
CoRR, 2022
NLM-Chem-BC7: manually annotated full-text resources for chemical entity annotation and indexing in biomedical articles.
Database J. Biol. Databases Curation, 2022
Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.
Database J. Biol. Databases Curation, 2022
Assigning species information to corresponding genes by a sequence labeling framework.
Database J. Biol. Databases Curation, 2022
2021
NLM-Gene, a richly annotated gold standard dataset for gene entities that addresses ambiguity and multi-species gene recognition.
J. Biomed. Informatics, 2021
NLM-Chem, a Gold-Standard Corpus for Chemical Entity Recognition in PubMed Full Text Literature.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
2020
Navigating the landscape of COVID-19 research through literature analysis: A bird's eye view.
CoRR, 2020
2019
PDC - a probabilistic distributional clustering algorithm: a case study on suicide articles in PubMed.
CoRR, 2019
Bioinform., 2019
PubMed Text Similarity Model and its application to curation efforts in the Conserved Domain Database.
Database J. Biol. Databases Curation, 2019
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine.
Database J. Biol. Databases Curation, 2019
2018
CoRR, 2018
2017
The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions.
Database J. Biol. Databases Curation, 2017
BioCreative VI Precision Medicine Track: creating a training corpus for mining protein-protein interactions affected by mutations.
Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017
2016
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.
Database J. Biol. Databases Curation, 2016
Crowdsourcing and curation: perspectives from biology and natural language processing.
Database J. Biol. Databases Curation, 2016
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016
Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 2016
2014
NCBI disease corpus: A resource for disease name recognition and concept normalization.
J. Biomed. Informatics, 2014
Database J. Biol. Databases Curation, 2014
Finding abbreviations in biomedical literature: three BioC-compatible modules and four BioC-formatted corpora.
Database J. Biol. Databases Curation, 2014
Natural language processing pipelines to annotate BioC collections with an application to the NCBI disease corpus.
Database J. Biol. Databases Curation, 2014
2013
Database J. Biol. Databases Curation, 2013
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013
Proceedings of the AMIA 2013, 2013
NCBI Disease Corpus: A Valuable Resource for Disease Name Recognition and Normalization.
Proceedings of the AMIA 2013, 2013
Proceedings of the AMIA 2013, 2013
2012
An Evolutionary Algorithm Approach for Feature Generation from Sequence Data and Its Application to DNA Splice Site Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
J. Biomed. Semant., 2012
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012
Proceedings of the Information Retrieval and Knowledge Discovery in Biomedical Text, 2012
2011
Semi-automatic semantic annotation of PubMed queries: A study on quality, efficiency, satisfaction.
J. Biomed. Informatics, 2011
BMC Bioinform., 2011
2010
J. Am. Medical Informatics Assoc., 2010
Bioinform., 2010
A Textual Representation Scheme for Identifying Clinical Relationships in Patient Records.
Proceedings of the Ninth International Conference on Machine Learning and Applications, 2010
2009
Database J. Biol. Databases Curation, 2009
2007
Feature Generation and Analysis Applied to sequence Classification for splice-Site Prediction.
PhD thesis, 2007
Features generated for computational splice-site prediction correspond to functional elements.
BMC Bioinform., 2007
Characterizing RNA Secondary-Structure Features and Their Effects on Splice-Site Prediction.
Proceedings of the Workshops Proceedings of the 7th IEEE International Conference on Data Mining (ICDM 2007), 2007
2006
A Feature Generation Algorithm for Sequences with Application to Splice-Site Prediction.
Proceedings of the Knowledge Discovery in Databases: PKDD 2006, 2006