Eric Bonnet

According to our database, Eric Bonnet authored at least 12 papers between 2004 and 2020.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2020

RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis.

Vidisha Singh, George D. Kalliolias, Marek Ostaszewski, Maëva Veyssiere, Eleftherios Pilalis, Piotr Gawron, Alexander Mazein, Eric Bonnet, Elisabeth Petit-Teixeira, Anna Niarakis

Database J. Biol. Databases Curation, 2020

2019

Conceptual and computational framework for logical modelling of biological networks deregulated in diseases.

Arnau Montagud, Pauline Traynard, Loredana Martignetti, Eric Bonnet, Emmanuel Barillot, Andrei Yu. Zinovyev, Laurence Calzone

Briefings Bioinform., 2019

2016

Calculating Biological Module Enrichment or Depletion and Visualizing Data on Large-scale Molecular Maps with ACSNMineR and RNaviCell Packages.

Paul Deveau, Emmanuel Barillot, Valentina Boeva, Andrei Yu. Zinovyev, Eric Bonnet

R J., 2016

2015

Integrative Multi-omics Module Network Inference with Lemon-Tree.

Eric Bonnet, Laurence Calzone, Tom Michoel

PLoS Comput. Biol., 2015

NaviCell Web Service for network-based data visualization.

Eric Bonnet, Eric Viara, Inna Kuperstein, Laurence Calzone, David P. A. Cohen, Emmanuel Barillot, Andrei Yu. Zinovyev

Nucleic Acids Res., 2015

2013

BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats.

Eric Bonnet, Laurence Calzone, Daniel Rovera, Gautier Stoll, Emmanuel Barillot, Andrei Yu. Zinovyev

BMC Syst. Biol., 2013

OCSANA: optimal combinations of interventions from network analysis.

Paola Vera-Licona, Eric Bonnet, Emmanuel Barillot, Andrei Yu. Zinovyev

Bioinform., 2013

2010

Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data.

Eric Bonnet, Tom Michoel, Yves Van de Peer

Bioinform., 2010

TAPIR, a web server for the prediction of plant microRNA targets, including target mimics.

Eric Bonnet, Ying He, Kenny Billiau, Yves Van de Peer

Bioinform., 2010

2007

Validating module network learning algorithms using simulated data.

Tom Michoel, Steven Maere, Eric Bonnet, Anagha Joshi, Yvan Saeys, Tim Van den Bulcke, Koenraad Van Leemput, Piet van Remortel, Martin Kuiper, Kathleen Marchal, Yves Van de Peer

BMC Bioinform., 2007

2006

Scalable hardware accelerator for comparing DNA and protein sequences.

Philippe Faes, Bram Minnaert, Mark Christiaens, Eric Bonnet, Yvan Saeys, Dirk Stroobandt, Yves Van de Peer

Proceedings of the 1st International Conference on Scalable Information Systems, 2006

2004

Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences.

Eric Bonnet, Jan Wuyts, Pierre Rouzé, Yves Van de Peer

Bioinform., 2004