Anita Burgun-Parenthoine
Orcid: 0000-0001-6855-4366
According to our database1,
Anita Burgun-Parenthoine
authored at least 134 papers
between 1991 and 2023.
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Bibliography
2023
Putting undergraduate medical students in AI-CDSS designers' shoes: An innovative teaching method to develop digital health critical thinking.
Int. J. Medical Informatics, March, 2023
The Smart Data Extractor, a Clinician Friendly Solution to Accelerate and Improve the Data Collection During Clinical Trials.
Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023
Improving Patient Similarity Using Different Modalities of Phenotypes Extracted from Clinical Narratives.
Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023
2022
viroCapt: A Bioinformatics Pipeline for Identifying Viral Insertion in Human Host Genome.
Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022
Towards a Clinical Decision Support System for Helping Medical Students in Emergency Call Centers.
Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022
Enriching UMLS-Based Phenotyping of Rare Diseases Using Deep-Learning: Evaluation on Jeune Syndrome.
Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022
An Interactive Interface for Displaying Recommendations on Emergency Phone Triage in Pediatrics.
Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022
Proceedings of the Workshop on the Interactions between Analogical Reasoning and Machine Learning (International Joint Conference on Artificial Intelligence, 2022
Determining the Set of Items to Include in Breast Operative Reports, Using Clustering Algorithms on Retrospective Data Extracted from Clinical DataWarehouse.
Proceedings of the Advances in Informatics, Management and Technology in Healthcare, 2022
Proceedings of the Workshop Proceedings of the 30th International Conferece on Case-Based Reasoning co-located with the 30th International Conference on Case-Based Reasoning (ICCBR 2022), 2022
2021
A framework for validating AI in precision medicine: considerations from the European ITFoC consortium.
BMC Medical Informatics Decis. Mak., 2021
Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites.
J. Am. Medical Informatics Assoc., 2021
A COVID-19 Decision Support System for Phone Call Triage, Designed by and for Medical Students.
Proceedings of the Public Health and Informatics, 2021
Fuzzy Matching for Symptom Detection in Tweets: Application to Covid-19 During the First Wave of the Pandemic in France.
Proceedings of the Public Health and Informatics, 2021
Identification of Similar Patients Through Medical Concept Embedding from Electronic Health Records: A Feasibility Study for Rare Disease Diagnosis.
Proceedings of the Public Health and Informatics, 2021
Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021
Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021
2020
International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium.
npj Digit. Medicine, 2020
Learning the grammar of prescription: recurrent neural network grammars for medication information extraction in clinical texts.
CoRR, 2020
The Impact of Specialized Corpora for Word Embeddings in Natural Langage Understanding.
Proceedings of the Digital Personalized Health and Medicine - Proceedings of MIE 2020, Medical Informatics Europe, Geneva, Switzerland, April 28, 2020
2019
J. Biomed. Informatics, 2019
What can millions of laboratory test results tell us about the temporal aspect of data quality? Study of data spanning 17 years in a clinical data warehouse.
Comput. Methods Programs Biomed., 2019
Do You Need Embeddings Trained on a Massive Specialized Corpus for Your Clinical Natural Language Processing Task?
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019
Evaluating the Impact of Text Duplications on a Corpus of More than 600, 000 Clinical Narratives in a French Hospital.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019
2018
A clinician friendly data warehouse oriented toward narrative reports: Dr. Warehouse.
J. Biomed. Informatics, 2018
Natural language understanding for task oriented dialog in the biomedical domain in a low resources context.
CoRR, 2018
Comparison of methods for early-readmission prediction in a high-dimensional heterogeneous covariates and time-to-event outcome framework.
CoRR, 2018
The Need of an Open Data Quality Policy: The Case of the "Transparency - Health" Database in the Prevention of Conflict of Interest.
Proceedings of the Building Continents of Knowledge in Oceans of Data: The Future of Co-Created eHealth, 2018
2017
A novel data-driven workflow combining literature and electronic health records to estimate comorbidities burden for a specific disease: a case study on autoimmune comorbidities in patients with celiac disease.
BMC Medical Informatics Decis. Mak., 2017
Finding patients using similarity measures in a rare diseases-oriented clinical data warehouse: Dr. Warehouse and the needle in the needle stack.
J. Biomed. Informatics, 2017
Improving a full-text search engine: the importance of negation detection and family history context to identify cases in a biomedical data warehouse.
J. Am. Medical Informatics Assoc., 2017
The Georges Pompidou University Hospital Clinical Data Warehouse: A 8-years follow-up experience.
Int. J. Medical Informatics, 2017
eSource for clinical trials: Implementation and evaluation of a standards-based approach in a real world trial.
Int. J. Medical Informatics, 2017
J. Biomed. Semant., 2017
Briefings Bioinform., 2017
Mining Adverse Drug Reactions in Social Media with Named Entity Recognition and Semantic Methods.
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017
Proceedings of the Database and Expert Systems Applications, 2017
2016
J. Medical Syst., 2016
Integrating Heterogeneous Biomedical Data for Cancer Research: the CARPEM infrastructure.
Appl. Clin. Inform., 2016
2015
An Ontology-Based Annotation of Cardiac Implantable Electronic Devices to Detect Therapy Changes in a National Registry.
IEEE J. Biomed. Health Informatics, 2015
Translational research platforms integrating clinical and omics data: a review of publicly available solutions.
Briefings Bioinform., 2015
Evaluation of Internet Social Networks using Net scoring Tool: A Case Study in Adverse Drug Reaction Mining.
Proceedings of the Digital Healthcare Empowering Europeans, 2015
Proposal for a European Public Health Research Infrastructure for Sharing of health and Medical administrative data (PHRIMA).
Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015
Proceedings of the International Conference on Biomedical Ontology, 2015
Transform: Implementing a Learning Healthcare System in Europe through Embedding Clinical Research into Clinical Practice.
Proceedings of the 48th Hawaii International Conference on System Sciences, 2015
Proceedings of the AMIA 2015, 2015
2014
Natural language processing of radiology reports for the detection of thromboembolic diseases and clinically relevant incidental findings.
BMC Bioinform., 2014
Enrichissement sémantique associé à la détection de la négation et des antécédents familiaux dans un entrepôt de données hospitalier.
Proceedings of the Actes des / Proceedings of 15es Journées francophones d'informatique médicale co-organisées avec / co-located with 2e Congrès National d'Informatique Médicale (CNIM 2014), 2014
Proceedings of the Formal Ontology in Information Systems, 2014
2013
Phenome-Wide Association Studies on a Quantitative Trait: Application to TPMT Enzyme Activity and Thiopurine Therapy in Pharmacogenomics.
PLoS Comput. Biol., 2013
A unified structural/terminological interoperability framework based on LexEVS: application to TRANSFoRm.
J. Am. Medical Informatics Assoc., 2013
OWL model of clinical trial eligibility criteria compatible with partially-known information.
J. Biomed. Semant., 2013
Preliminary Evaluation of a Literature-based Discovery Method for Explaining Drug Adverse Effects.
Proceedings of the AMIA 2013, 2013
2012
J. Biomed. Semant., 2012
Proceedings of the Quality of Life through Quality of Information, 2012
Comparing Drools and ontology reasoning approaches for telecardiology decision support.
Proceedings of the Quality of Life through Quality of Information, 2012
Proceedings of the ACM International Health Informatics Symposium, 2012
Proceedings of the Formal Ontology in Information Systems, 2012
Proceedings of the AMIA 2012, 2012
2011
Proceedings of the User Centered Networked Health Care - Proceedings of MIE 2011, 2011
2010
Proceedings of the 5th International Workshop on Ontology Matching (OM-2010), 2010
Proceedings of the Semantic Web - ISWC 2010 - 9th International Semantic Web Conference, 2010
Documentation in Pharmacovigilance: Using an ontology to extend and normalize Pubmed queries.
Proceedings of the MEDINFO 2010, 2010
Proceedings of the MEDINFO 2010, 2010
Verification of parameters semantic compatibility for semi-automatic web service composition: a generic case study.
Proceedings of the iiWAS'2010, 2010
2009
Analyzing polysemous concepts from a clinical perspective: Application to auditing concept categorization in the UMLS.
J. Biomed. Informatics, 2009
Proceedings of the 8th International Conference on Terminology and Artificial Intelligence, 2009
A Knowledge Management Platform for Documentation of Case Reports in Pharmacovigilance.
Proceedings of the Medical Informatics in a United and Healthy Europe - Proceedings of MIE 2009, The XXIInd International Congress of the European Federation for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August 30, 2009
Proceedings of the AMIA 2009, 2009
2008
Int. J. Medical Informatics, 2008
Integrating clinical, gene expression, protein expression and preanalytical data for in silico cancer research.
Proceedings of the eHealth Beyond the Horizon, 2008
Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System.
Proceedings of the Data Integration in the Life Sciences, 5th International Workshop, 2008
Using regular expressions to extract information on pacemaker implantation procedures from clinical reports.
Proceedings of the AMIA 2008, 2008
2007
A method exploiting syntactic patterns and the UMLS semantics for aligning biomedical ontologies: The case of OBO disease ontologies.
Int. J. Medical Informatics, 2007
A transversal approach to predict gene product networks from ontology-based similarity.
BMC Bioinform., 2007
Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies.
Artif. Intell. Medicine, 2007
Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007
Méthodes de mapping situées aux niveaux instance et schéma pour l'intégration de sources de données hétérogènes.
Proceedings of the IC 2007: Ingénierie des connaissances 2007 (Proceedings of the 18th French Knowledge Engineering Conference), 2007
Proceedings of the AMIA 2007, 2007
2006
Combining biomedical knowledge and transcriptomic data to extract new knowledge on genes.
J. Integr. Bioinform., 2006
J. Biomed. Informatics, 2006
Amplification of Terminologia anatomica by French language terms using Latin terms matching algorithm: A prototype for other language.
Int. J. Medical Informatics, 2006
Problem-based learning in medical informatics for undergraduate medical students: An experiment in two medical schools.
Int. J. Medical Informatics, 2006
Mapping data elements to terminological resources for integrating biomedical data sources.
BMC Bioinform., 2006
Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets.
BMC Bioinform., 2006
Data Integration through data elements: Mapping data elements to terminological resources.
Proceedings of the Second International Symposium on Semantic Mining in Biomedicine, 2006
Aligning biomedical ontologies using lexical methods and the UMLS: the case of Disease ontologies.
Proceedings of the Ubiquity: Technologies for Better Health in Aging Societies, 2006
Evidence in pharmacovigilance: extracting Adverse Drug Reactions articles from MEDLINE to link them to case databases.
Proceedings of the Ubiquity: Technologies for Better Health in Aging Societies, 2006
Using WordNet to Improve the Mapping of Data Elements to UMLS for Data Sources Integration.
Proceedings of the AMIA 2006, 2006
2005
Modelling a decision-support system for oncology using rule-based and case-based reasoning methodologies.
Int. J. Medical Informatics, 2005
Proceedings of the Biocomputing 2005, 2005
Proceedings of the Connecting Medical Informatics and Bio-Informatics - Proceedings of MIE 2005, 2005
Proceedings of the Connecting Medical Informatics and Bio-Informatics - Proceedings of MIE 2005, 2005
Integrating and Warehousing Liver Gene Expression Data and Related Biomedical Resources in GEDAW.
Proceedings of the Data Integration in the Life Sciences, Second InternationalWorkshop, 2005
Proceedings of the AMIA 2005, 2005
2004
Experiments in cross-language medical information retrieval using a mixing translation module.
Proceedings of the MEDINFO 2004, 2004
Proceedings of the MEDINFO 2004, 2004
Aligning Knowledge Sources in the UMLS: Methods, Quantitative Results, and Applications.
Proceedings of the MEDINFO 2004, 2004
Proceedings of the KR-MED 2004, 2004
2003
Int. J. Medical Informatics, 2003
Developing the ontological foundations of a terminological system for end-stage diseases, organ failure, dialysis and transplantation.
Int. J. Medical Informatics, 2003
Int. J. Medical Informatics, 2003
Web Ontology Language Requirements w.r.t Expressiveness of Taxonomy and Axioms in Medicine.
Proceedings of the Semantic Web, 2003
Proceedings of the New Navigators: from Professionals to Patients, 2003
Proceedings of the New Navigators: from Professionals to Patients, 2003
BioMeKe : an ontology-based biomedical knowledge extraction system devoted to transcriptome analysis.
Proceedings of the New Navigators: from Professionals to Patients, 2003
Proceedings of the New Navigators: from Professionals to Patients, 2003
Modelling dependencies between relations to ensure consistency of a cerebral cortex anatomy knowledge base.
Proceedings of the New Navigators: from Professionals to Patients, 2003
Evaluation of WordNet as a source of lay knowledge for molecular biology and genetic diseases: A feasibility study.
Proceedings of the New Navigators: from Professionals to Patients, 2003
Proceedings of the Artificial Intelligence in Medicine, 2003
2002
Int. J. Medical Informatics, 2002
Towards a sharable numeric and symbolic knowledge base on cerebral cortex anatomy: lessons learned from a prototype.
Proceedings of the AMIA 2002, 2002
Representation of roles in biomedical ontologies: a case study in functional genomics.
Proceedings of the AMIA 2002, 2002
Proceedings of the ACL 2002 Workshop on Natural Language Processing in the Biomedical Domain, 2002
2001
Design of a CSCL Environment for Clinical Reasoning Learning and Problem-Based Learning in Medicine.
Proceedings of the MEDINFO 2001, 2001
Proceedings of the MEDINFO 2001, 2001
Building an Ontology for End-stage Diseases and Organ Failure in the Context of Transplantation and Dialysis.
Proceedings of the MEDINFO 2001, 2001
Proceedings of the MEDINFO 2001, 2001
Methods for Exploring the Semantics of the Relationships between Co-occurring UMLS Concepts.
Proceedings of the MEDINFO 2001, 2001
Natural Language Processing, Medical Terminologies, and Ontological Issues for Patient Records and Biomedical Knowledge.
Proceedings of the MEDINFO 2001, 2001
Proceedings of the 2nd International Conference on Formal Ontology in Information Systems, 2001
Proceedings of the AMIA 2001, 2001
2000
Knowledge acquisition to qualify Unified Medical Language System interconceptual relationships.
Proceedings of the AMIA 2000, 2000
A Probabilistic Diagnostic Aid System on Internet, Using Data From a Large Medical Knowledge Base.
Proceedings of the AMIA 2000, 2000
1999
Automatic enrichment of the Unified Medical Language System starting from the ADM knowledge base.
Proceedings of the Medical Informatics Europe '99, Proceedings, Ljubljana, Slovenia, 1999
A method for an automated decomposition of a complex term into its conceptual components.
Proceedings of the Medical Informatics Europe '99, Proceedings, Ljubljana, Slovenia, 1999
1998
Case Report: Evaluation of the Unified Medical Language System as a Medical Knowledge Source.
J. Am. Medical Informatics Assoc., 1998
A Collaborative Approach to Building a Terminology for Medical Procedures using a Web-based Application : From Specifications to daily use.
Proceedings of the MEDINFO '98, 1998
1997
Application of Information Technology: A Web Terminology Server Using UMLS for the Description of Medical Procedures.
J. Am. Medical Informatics Assoc., 1997
1991
Proceedings of the Medical Informatics Europe 1991, 1991