Bruce Fischl

Orcid: 0000-0002-2413-1115

Affiliations:
  • Massachusetts General Hospital, Charlestown, MA, USA
  • Harvard Medical School, Department of Radiology, USA


According to our database1, Bruce Fischl authored at least 191 papers between 1996 and 2024.

Collaborative distances:

Awards

IEEE Fellow

IEEE Fellow 1994, "For contributions to the design and understanding of power systems.".

Timeline

Legend:

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Bibliography

2024
Boosting Skull-Stripping Performance for Pediatric Brain Images.
CoRR, 2024

2023
SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining.
Medical Image Anal., May, 2023

Fully Convolutional Slice-to-Volume Reconstruction for Single-Stack MRI.
CoRR, 2023

JOSA: Joint surface-based registration and atlas construction of brain geometry and function.
CoRR, 2023

Anatomy-aware and acquisition-agnostic joint registration with SynthMorph.
CoRR, 2023

Anatomy-specific acquisition-agnostic affine registration learned from fictitious images.
Proceedings of the Medical Imaging 2023: Image Processing, 2023

Data Consistent Deep Rigid MRI Motion Correction.
Proceedings of the Medical Imaging with Deep Learning, 2023

Joint cortical registration of geometry and function using semi-supervised learning.
Proceedings of the Medical Imaging with Deep Learning, 2023

Multi-head Graph Convolutional Network for Structural Connectome Classification.
Proceedings of the Graphs in Biomedical Image Analysis, and Overlapped Cell on Tissue Dataset for Histopathology, 2023

Intermediate Deformable Image Registration Via Windowed Cross-Correlation.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

2022
SynthMorph: Learning Contrast-Invariant Registration Without Acquired Images.
IEEE Trans. Medical Imaging, 2022

Volumetric Characterization of Microvasculature in Ex Vivo Human Brain Samples By Serial Sectioning Optical Coherence Tomography.
IEEE Trans. Biomed. Eng., 2022

A novel algorithm for multiplicative speckle noise reduction in <i>ex vivo</i> human brain OCT images.
NeuroImage, 2022

SynthStrip: skull-stripping for any brain image.
NeuroImage, 2022

Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas.
Medical Image Anal., 2022

Learning the Effect of Registration Hyperparameters with HyperMorph.
CoRR, 2022

SUD: Supervision by Denoising for Medical Image Segmentation.
CoRR, 2022

SuperWarp: Supervised Learning and Warping on U-Net for Invariant Subvoxel-Precise Registration.
Proceedings of the Biomedical Image Registration - 10th International Workshop, 2022

TopoFit: Rapid Reconstruction of Topologically-Correct Cortical Surfaces.
Proceedings of the International Conference on Medical Imaging with Deep Learning, 2022

2021
Multi-Atlas Image Soft Segmentation via Computation of the Expected Label Value.
IEEE Trans. Medical Imaging, 2021

Reliability and sensitivity of two whole-brain segmentation approaches included in FreeSurfer - ASEG and SAMSEG.
NeuroImage, 2021

Quantification of volumetric morphometry and optical property in the cortex of human cerebellum at micrometer resolution.
NeuroImage, 2021

Mapping the subcortical connectivity of the human default mode network.
NeuroImage, 2021

High-fidelity approximation of grid- and shell-based sampling schemes from undersampled DSI using compressed sensing: Post mortem validation.
NeuroImage, 2021

Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast.
NeuroImage, 2021

A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images.
NeuroImage, 2021

SynthSeg: Domain Randomisation for Segmentation of Brain MRI Scans of any Contrast and Resolution.
CoRR, 2021

Unsupervised learning of MRI tissue properties using MRI physics models.
CoRR, 2021

Conductance-Based Structural Brain Connectivity in Aging and Dementia.
Brain Connect., 2021

Learning Mri Contrast-Agnostic Registration.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

HyperMorph: Amortized Hyperparameter Learning for Image Registration.
Proceedings of the Information Processing in Medical Imaging, 2021

2020
Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0-2 years.
NeuroImage, 2020

Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain.
NeuroImage, 2020

FastSurfer - A fast and accurate deep learning based neuroimaging pipeline.
NeuroImage, 2020

Cortical surface registration using unsupervised learning.
NeuroImage, 2020

Test-retest reliability of FreeSurfer automated hippocampal subfield segmentation within and across scanners.
NeuroImage, 2020

Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast.
CoRR, 2020

Learning Multi-Modal Image Registration without Real Data.
CoRR, 2020

Cortical surface registration using unsupervised learning.
CoRR, 2020

A Learning Strategy for Contrast-agnostic MRI Segmentation.
Proceedings of the International Conference on Medical Imaging with Deep Learning, 2020

3D Reconstruction and Segmentation of Dissection Photographs for MRI-Free Neuropathology.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Compensatory Brain Connection Discovery in Alzheimer's Disease.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

Abstract: FastSurfer.
Proceedings of the Bildverarbeitung für die Medizin 2020 - Algorithmen - Systeme, 2020

2019
PSACNN: Pulse sequence adaptive fast whole brain segmentation.
NeuroImage, 2019

Quantification of structural brain connectivity via a conductance model.
NeuroImage, 2019

Representational similarity precedes category selectivity in the developing ventral visual pathway.
NeuroImage, 2019

The Lifespan Human Connectome Project in Aging: An overview.
NeuroImage, 2019

Intracortical smoothing of small-voxel fMRI data can provide increased detection power without spatial resolution losses compared to conventional large-voxel fMRI data.
NeuroImage, 2019

Fast Infant MRI Skullstripping with Multiview 2D Convolutional Neural Networks.
CoRR, 2019

Unsupervised Deep Learning for Bayesian Brain MRI Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Expected Label Value Computation for Atlas-Based Image Segmentation.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

Detecting Structural Brain Connectivity Differences in Dementia Through a Conductance Model.
Proceedings of the 53rd Asilomar Conference on Signals, Systems, and Computers, 2019

2018
Advantages of cortical surface reconstruction using submillimeter 7 T MEMPRAGE.
NeuroImage, 2018

as-PSOCT: Volumetric microscopic imaging of human brain architecture and connectivity.
NeuroImage, 2018

AnatomiCuts: Hierarchical clustering of tractography streamlines based on anatomical similarity.
NeuroImage, 2018

Analysis strategies for high-resolution UHF-fMRI data.
NeuroImage, 2018

A probabilistic atlas of the human thalamic nuclei combining <i>ex vivo</i> MRI and histology.
NeuroImage, 2018

False positive rates in surface-based anatomical analysis.
NeuroImage, 2018

Microstructural parcellation of the human brain.
NeuroImage, 2018

A probabilistic template of human mesopontine tegmental nuclei from <i>in vivo</i> 7 T MRI.
NeuroImage, 2018

Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections.
Medical Image Anal., 2018

A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology.
CoRR, 2018

Pulse Sequence Resilient Fast Brain Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Model-Based Refinement of Nonlinear Registrations in 3D Histology Reconstruction.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

2017
Multimodal Image Registration Through Simultaneous Segmentation.
IEEE Signal Process. Lett., 2017

High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas.
NeuroImage, 2017

Mid-space-independent deformable image registration.
NeuroImage, 2017

Functional density and edge maps: Characterizing functional architecture in individuals and improving cross-subject registration.
NeuroImage, 2017

2016
Joint reconstruction of white-matter pathways from longitudinal diffusion MRI data with anatomical priors.
NeuroImage, 2016

Prospective motion correction with volumetric navigators (vNavs) reduces the bias and variance in brain morphometry induced by subject motion.
NeuroImage, 2016

Multivariate statistical analysis of diffusion imaging parameters using partial least squares: Application to white matter variations in Alzheimer's disease.
NeuroImage, 2016

Bayesian longitudinal segmentation of hippocampal substructures in brain MRI using subject-specific atlases.
NeuroImage, 2016

Hierarchical Clustering of Tractography Streamlines Based on Anatomical Similarity.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

A Fast Approach to Automatic Detection of Brain Lesions.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2016

2015
BrainPrint: A discriminative characterization of brain morphology.
NeuroImage, 2015

Gray matter myelination of 1555 human brains using partial volume corrected MRI images.
NeuroImage, 2015

Corrigendum to "Event time analysis of longitudinal neuroimage data" [NeuroImage 97 (15 August 2014) 9-18].
NeuroImage, 2015

Head motion during MRI acquisition reduces gray matter volume and thickness estimates.
NeuroImage, 2015

An algorithm for optimal fusion of atlases with different labeling protocols.
NeuroImage, 2015

Bayesian segmentation of brainstem structures in MRI.
NeuroImage, 2015

A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI.
NeuroImage, 2015

Relevant feature set estimation with a knock-out strategy and random forests.
NeuroImage, 2015

Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge.
NeuroImage, 2015

Corrigendum to "Spatiotemporal linear mixed effects modeling for the mass-univariate analysis of longitudinal neuroimage data" [NeuroImage 81 (1 November 2013) 358-370].
NeuroImage, 2015

Corrigendum to "Statistical analysis of longitudinal neuroimage data with Linear Mixed Effects models" [NeuroImage 66 (1 February 2013) 249-260].
NeuroImage, 2015

Avoiding symmetry-breaking spatial non-uniformity in deformable image registration via a quasi-volume-preserving constraint.
NeuroImage, 2015

Mid-Space-Independent Symmetric Data Term for Pairwise Deformable Image Registration.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

2014
Spurious group differences due to head motion in a diffusion MRI study.
NeuroImage, 2014

Localizing the human primary auditory cortex in vivo using structural MRI.
NeuroImage, 2014

Cross-validation of serial optical coherence scanning and diffusion tensor imaging: A study on neural fiber maps in human medulla oblongata.
NeuroImage, 2014

Event time analysis of longitudinal neuroimage data.
NeuroImage, 2014

Blockface histology with optical coherence tomography: A comparison with Nissl staining.
NeuroImage, 2014

Cortical surface-based analysis reduces bias and variance in kinetic modeling of brain PET data.
NeuroImage, 2014

Quantitative comparison of cortical surface reconstructions from MP2RAGE and multi-echo MPRAGE data at 3 and 7 T.
NeuroImage, 2014

MRI parcellation of ex vivo medial temporal lobe.
NeuroImage, 2014

Conceptual and Data-based Investigation of Genetic Influences and Brain Asymmetry: A Twin Study of Multiple Structural Phenotypes.
J. Cogn. Neurosci., 2014

2013
On Removing Interpolation and Resampling Artifacts in Rigid Image Registration.
IEEE Trans. Image Process., 2013

Radial and tangential neuronal migration pathways in the human fetal brain: Anatomically distinct patterns of diffusion MRI coherence.
NeuroImage, 2013

The minimal preprocessing pipelines for the Human Connectome Project.
NeuroImage, 2013

Spatiotemporal linear mixed effects modeling for the mass-univariate analysis of longitudinal neuroimage data.
NeuroImage, 2013

Statistical analysis of longitudinal neuroimage data with Linear Mixed Effects models.
NeuroImage, 2013

Predicting the location of human perirhinal cortex, Brodmann's area 35, from MRI.
NeuroImage, 2013

A Surface-based Analysis of Language Lateralization and Cortical Asymmetry.
J. Cogn. Neurosci., 2013

Example-Based Restoration of High-Resolution Magnetic Resonance Image Acquisitions.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Is Synthesizing MRI Contrast Useful for Inter-modality Analysis?
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Symmetric non-rigid image registration via an adaptive quasi-volume-preserving constraint.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

2012
Measuring and comparing brain cortical surface area and other areal quantities.
NeuroImage, 2012

Within-subject template estimation for unbiased longitudinal image analysis.
NeuroImage, 2012

Genetic influences on hippocampal volume differ as a function of testosterone level in middle-aged men.
NeuroImage, 2012

Genetic and environmental influences of white and gray matter signal contrast: A new phenotype for imaging genetics?
NeuroImage, 2012

FreeSurfer.
NeuroImage, 2012

Validating atlas-guided DOT: A comparison of diffuse optical tomography informed by atlas and subject-specific anatomies.
NeuroImage, 2012

2011
Connectivity-based segmentation of human amygdala nuclei using probabilistic tractography.
NeuroImage, 2011

Hippocampal degeneration is associated with temporal and limbic gray matter/white matter tissue contrast in Alzheimer's disease.
NeuroImage, 2011

Avoiding asymmetry-induced bias in longitudinal image processing.
NeuroImage, 2011

Thickness of the human cerebral cortex is associated with metrics of cerebrovascular health in a normative sample of community dwelling older adults.
NeuroImage, 2011

In vivo evidence of disseminated subpial T2* signal changes in multiple sclerosis at 7 T: A surface-based analysis.
NeuroImage, 2011

Automated Probabilistic Reconstruction of White-Matter Pathways in Health and Disease Using an Atlas of the Underlying Anatomy.
Frontiers Neuroinformatics, 2011

Atlas-based segmentation for globus pallidus internus targeting on low-resolution MRI.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

2010
Learning Task-Optimal Registration Cost Functions for Localizing Cytoarchitecture and Function in the Cerebral Cortex.
IEEE Trans. Medical Imaging, 2010

Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration.
IEEE Trans. Medical Imaging, 2010

A Generative Model for Image Segmentation Based on Label Fusion.
IEEE Trans. Medical Imaging, 2010

Atlas Generation for Subcortical and Ventricular Structures With Its Applications in Shape Analysis.
IEEE Trans. Image Process., 2010

Improved tractography alignment using combined volumetric and surface registration.
NeuroImage, 2010

Altered white matter microstructure in the corpus callosum in Huntington's disease: Implications for cortical "disconnection".
NeuroImage, 2010

Highly accurate inverse consistent registration: A robust approach.
NeuroImage, 2010

Laminar analysis of 7 T BOLD using an imposed spatial activation pattern in human V1.
NeuroImage, 2010

Corrigendum to "Genetic and environmental influences on the size of specific brain regions in midlife: The VETSA MRI study": [NeuroImage 49 (2010) 1213-1223].
NeuroImage, 2010

Genetic and environmental influences on the size of specific brain regions in midlife: The VETSA MRI study.
NeuroImage, 2010

Salivary cortisol and prefrontal cortical thickness in middle-aged men: A twin study.
NeuroImage, 2010

Evaluation of volume-based and surface-based brain image registration methods.
NeuroImage, 2010

Evaluating the validity of volume-based and surface-based brain image registration for developmental cognitive neuroscience studies in children 4 to 11 years of age.
NeuroImage, 2010

Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature.
NeuroImage, 2010

Anatomical atlas-guided diffuse optical tomography of brain activation.
NeuroImage, 2010

2009
Combined Volumetric and Surface Registration.
IEEE Trans. Medical Imaging, 2009

Increased sensitivity to effects of normal aging and Alzheimer's disease on cortical thickness by adjustment for local variability in gray/white contrast: A multi-sample MRI study.
NeuroImage, 2009

Age-associated alterations in cortical gray and white matter signal intensity and gray to white matter contrast.
NeuroImage, 2009

Regional white matter volume differences in nondemented aging and Alzheimer's disease.
NeuroImage, 2009

MRI-derived measurements of human subcortical, ventricular and intracranial brain volumes: Reliability effects of scan sessions, acquisition sequences, data analyses, scanner upgrade, scanner vendors and field strengths.
NeuroImage, 2009

Locating the functional and anatomical boundaries of human primary visual cortex.
NeuroImage, 2009

Accurate and robust brain image alignment using boundary-based registration.
NeuroImage, 2009

Predicting the location of entorhinal cortex from MRI.
NeuroImage, 2009

Cognitive function and brain structure correlations in healthy elderly East Asians.
NeuroImage, 2009

Target-specific contrast agents for magnetic resonance microscopy.
NeuroImage, 2009

Task-Optimal Registration Cost Functions.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Supervised Nonparametric Image Parcellation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Anatomical Priors for Global Probabilistic Diffusion Tractography.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

2008
Corrigendum to "Volumetric cerebral characteristics of children exposed to opiates and other substances in utero" [NeuroImage 36 (2007) 1331-1344].
NeuroImage, 2008

Brain morphometry with multiecho MPRAGE.
NeuroImage, 2008

Accurate prediction of V1 location from cortical folds in a surface coordinate system.
NeuroImage, 2008

The relationship between diffusion tensor imaging and volumetry as measures of white matter properties.
NeuroImage, 2008

Detection of cortical thickness correlates of cognitive performance: Reliability across MRI scan sessions, scanners, and field strengths.
NeuroImage, 2008

Effects of registration regularization and atlas sharpness on segmentation accuracy.
Medical Image Anal., 2008

A methodology for analyzing curvature in the developing brain from preterm to adult.
Int. J. Imaging Syst. Technol., 2008

Shape Analysis with Overcomplete Spherical Wavelets.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Spherical Demons: Fast Surface Registration.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Model-Based Segmentation of Hippocampal Subfields in Ultra-High Resolution In Vivo MRI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

2007
Cortical Surface Shape Analysis Based on Spherical Wavelets.
IEEE Trans. Medical Imaging, 2007

Geometrically Accurate Topology-Correction of Cortical Surfaces Using Nonseparating Loops.
IEEE Trans. Medical Imaging, 2007

Atlas Renormalization for Improved Brain MR Image Segmentation Across Scanner Platforms.
IEEE Trans. Medical Imaging, 2007

Feasibility of Multi-site Clinical Structural Neuroimaging Studies of Aging Using Legacy Data.
Neuroinformatics, 2007

Volumetric cerebral characteristics of children exposed to opiates and other substances in utero.
NeuroImage, 2007

Reduced microstructural integrity of the white matter underlying anterior cingulate cortex is associated with increased saccadic latency in schizophrenia.
NeuroImage, 2007

Geometry Driven Volumetric Registration.
Proceedings of the Information Processing in Medical Imaging, 2007

Cortical Folding Development Study based on Over-Complete Spherical Wavelets.
Proceedings of the IEEE 11th International Conference on Computer Vision, 2007

What Data to Co-register for Computing Atlases.
Proceedings of the IEEE 11th International Conference on Computer Vision, 2007

Detecting Cortical Surface Regions in Structural MR Data.
Proceedings of the IEEE 11th International Conference on Computer Vision, 2007

2006
Regional cortical thickness matters in recall after months more than minutes.
NeuroImage, 2006

Mapping an intrinsic MR property of gray matter in auditory cortex of living humans: A possible marker for primary cortex and hemispheric differences.
NeuroImage, 2006

Detailed semiautomated MRI based morphometry of the neonatal brain: Preliminary results.
NeuroImage, 2006

Human cerebral cortex: A system for the integration of volume- and surface-based representations.
NeuroImage, 2006

Reliability in multi-site structural MRI studies: Effects of gradient non-linearity correction on phantom and human data.
NeuroImage, 2006

Reliability of MRI-derived measurements of human cerebral cortical thickness: The effects of field strength, scanner upgrade and manufacturer.
NeuroImage, 2006

Selective increase of cortical thickness in high-performing elderly - structural indices of optimal cognitive aging.
NeuroImage, 2006

An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest.
NeuroImage, 2006

Shape-based Discrimination and Classification of Cortical Surfaces.
Proceedings of the 18th International Conference on Pattern Recognition (ICPR 2006), 2006

Cortical Surface Shape Analysis Based on Spherical Wavelet Transformation.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2006

2005
On-line automatic slice positioning for brain MR imaging.
NeuroImage, 2005

A Genetic Algorithm for the Topology Correction of Cortical Surfaces.
Proceedings of the Information Processing in Medical Imaging, 2005

Active Contours Under Topology Control Genus Preserving Level Sets.
Proceedings of the Computer Vision for Biomedical Image Applications, 2005

2004
A hybrid approach to the skull stripping problem in MRI.
NeuroImage, 2004

2003
Topological Correction of Subcortical Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Permutation Tests for Classification: Towards Statistical Significance in Image-Based Studies.
Proceedings of the Information Processing in Medical Imaging, 2003

2002
Discriminative Analysis for Image-Based Studies.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2002

2001
Automated Manifold Surgery: Constructing Geometrically Accurate and Topologically Correct Models of the Human Cerebral Cortex.
IEEE Trans. Medical Imaging, 2001

1999
Adaptive Nonlocal Filtering: A Fast Alternative to Anisotropic Diffusion for Image Enhancement.
IEEE Trans. Pattern Anal. Mach. Intell., 1999

1998
Rapid Anisotropic Diffusion Using Space-Variant Vision.
Int. J. Comput. Vis., 1998

1997
Learning an Integral Equation Approximation to Nonlinear Anisotropic Diffusion in Image Processing.
IEEE Trans. Pattern Anal. Mach. Intell., 1997

The Local Structure of Space-variant Images.
Neural Networks, 1997

Fast Adaptive Alternatives to Nonlinear Diffusion in Image Enhancement: Green's Function Approximators and Nonlocal Filters.
Proceedings of the Scale-Space Theory in Computer Vision, First International Conference, 1997

1996
Learned adaptive nonlinear filtering for anisotropic diffusion approximation in image processing.
Proceedings of the 13th International Conference on Pattern Recognition, 1996


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