Charlie Hodgman

According to our database, Charlie Hodgman authored at least 26 papers between 1986 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2019

Gsmodutils: a python based framework for test-driven genome scale metabolic model development.

James P. Gilbert, Nicole Pearcy, Rupert Norman, Thomas Millat, Klaus Winzer, John R. King, Charlie Hodgman, Nigel P. Minton, Jamie Twycross

Bioinform., 2019

2017

The logic of the floral transition: Reverse-engineering the switch controlling the identity of lateral organs.

Jean-Louis Dinh, Etienne Farcot, Charlie Hodgman

PLoS Comput. Biol., 2017

2013

Inference of the Genetic Network Regulating Lateral Root Initiation in Arabidopsis thaliana.

Daniele Muraro, Ute Voß, Michael Wilson, Malcolm Bennett, Helen M. Byrne, Ive De Smet, Charlie Hodgman, John R. King

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

2012

Parameter Estimation Using Metaheuristics in Systems Biology: A Comprehensive Review.

Jianyong Sun, Jonathan M. Garibaldi, Charlie Hodgman

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

2011

Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis.

Artem Lysenko, Michael Defoin-Platel, Keywan Hassani-Pak, Jan Taubert, Charlie Hodgman, Christopher J. Rawlings, Mansoor A. S. Saqi

BMC Bioinform., 2011

2009

Inference of Gene Regulatory Networks Using Boolean-Network Inference Methods.

Graham J. Hickman, Charlie Hodgman

J. Bioinform. Comput. Biol., 2009

2008

Genetic algorithm and optimized weight matrix application for peroxisome proliferator response elements recognition: Prerequisites of accuracy growth for wide genome research.

Victor G. Levitsky, Elena V. Ignatieva, Eugenia Aman, Tatyana I. Merkulova, Nikolay A. Kolchanov, T. Charles Hodgman

Intell. Data Anal., 2008

2007

A systems biology approach to modelling tea (Camellia sinensis).

Alex Marshall, Sirisha Gollapudi, Jacquie de Silva, Charlie Hodgman

BMC Syst. Biol., 2007

Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions.

Victor G. Levitsky, Elena V. Ignatieva, Elena A. Ananko, Igor I. Turnaev, Tatyana I. Merkulova, Nikolay A. Kolchanov, T. Charles Hodgman

BMC Bioinform., 2007

Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes.

Nikolay A. Kolchanov, Tatyana I. Merkulova, Elena V. Ignatieva, Elena A. Ananko, Dmitry Yu. Oshchepkov, Victor G. Levitsky, Gennady V. Vasiliev, Nataly V. Klimova, Vasily M. Merkulov, T. Charles Hodgman

Briefings Bioinform., 2007

Integrative biology - the way forward.

Charlie Hodgman

Briefings Bioinform., 2007

2006

A bio-basis function neural network for protein peptide cleavage activity characterisation.

Zheng Rong Yang, Jonathan Dry, Rebecca Thomson, T. Charles Hodgman

Neural Networks, 2006

The implications for Bioinformatics of integration across physical scales.

T. Charles Hodgman, Y. Ugartechea-Chirino, G. Tansley, I. Dryden

J. Integr. Bioinform., 2006

2004

Constructing an enzyme-centric view of metabolism.

Andrew B. Horne, T. Charles Hodgman, Hugh D. Spence, Andrew R. Dalby

Bioinform., 2004

Editorial: The informatics of post-translational modification and its implications for systems biology.

Charlie Hodgman

Briefings Bioinform., 2004

2003

Characterizing proteolytic cleavage site activity using bio-basis function neural networks.

Rebecca Thomson, T. Charles Hodgman, Zheng Rong Yang, Austin K. Doyle

Bioinform., 2003

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.

Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, Dennis Bray, Athel Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, Jan-Hendrik S. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang

Bioinform., 2003

2001

The 2nd international conference on the Bioinformatics of Genome Regulation and Structure (BGRS-2000), Novosibirsk, August 2000.

Nikolay A. Kolchanov, Charlie Hodgman

Bioinform., 2001

Simultaneous Modelling of Metabolic, Genetic and Product-interaction Networks.

Nick S. Juty, Hugh D. Spence, Hans R. Hotz, Haizhou Tang, Igor Goryanin, T. Charles Hodgman

Briefings Bioinform., 2001

2000

A historical perspective on gene/protein functional assignment.

T. Charles Hodgman

Bioinform., 2000

1999

Mathematical simulation and analysis of cellular metabolism and regulation.

Igor Goryanin, T. Charles Hodgman, Evgeni Selkov

Bioinform., 1999

INTERACT: An Object Oriented Protein-Protein Interaction Database.

Karen Eilbeck, Andy Brass, Norman W. Paton, Charlie Hodgman

Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

1998

Automated management of gene discovery projects.

S. Taylor, T. Charles Hodgman, C. B. Littler, Roger A. Sayle, R. W. Gill, M. D. Oxer, C. H. O'Donnell, Andrew Lyall

Bioinform., 1998

1997

A new dynamic tool to perform assembly of expressed sequence tags (ESTs).

R. W. Gill, T. Charles Hodgman, C. B. Littler, M. D. Oxer, D. S. Montgomery, S. Taylor, P. Sanseau

Comput. Appl. Biosci., 1997

1989

The elucidation of protein function by sequence motif analysis.

T. Charles Hodgman

Comput. Appl. Biosci., 1989

1986

The elucidation of protein function from its amino acid sequence.

T. Charles Hodgman

Comput. Appl. Biosci., 1986