Karen Eilbeck

According to our database1, Karen Eilbeck authored at least 31 papers between 1999 and 2020.

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Bibliography

2020
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
Bioinform., 2020

Utilization of BPM+ Health for the Representation of Clinical Knowledge: A Framework for the Expression and Assessment of Clinical Practice Guidelines (CPG) Utilizing Existing and Emerging Object Management Group (OMG) Standards.
Proceedings of the AMIA 2020, 2020

2019
Implementing the VMC specification to reduce ambiguity in genomic variant representation.
Proceedings of the AMIA 2019, 2019

Continuous Predictive Modelling for Sepsis, Organ Failure, and In-hospital Mortality in the Intensive Care Unit.
Proceedings of the AMIA 2019, 2019

2018
The VAAST Variant Prioritizer (VVP): ultrafast, easy to use whole genome variant prioritization tool.
BMC Bioinform., 2018

2017
Semantics-oriented data science and computational life sciences: Innovative application of semantic technologies in microRNA and lncRNA research.
Proceedings of the 7th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2017

2016
The genomic CDS sandbox: An assessment among domain experts.
J. Biomed. Informatics, 2016

The development of non-coding RNA ontology.
Int. J. Data Min. Bioinform., 2016

OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data.
J. Biomed. Semant., 2016

The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology.
J. Biomed. Semant., 2016

2015
Birth of identity: understanding changes to birth certificates and their value for identity resolution.
J. Am. Medical Informatics Assoc., 2015

Improving the Sequence Ontology terminology for genomic variant annotation.
J. Biomed. Semant., 2015

A semantic approach for knowledge capture of MIcroRNA-Target gene interactions.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

A domain ontology for the Non-Coding RNA field.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
Technical desiderata for the integration of genomic data with clinical decision support.
J. Biomed. Informatics, 2014

Clinical Decision Support for Whole Genome Sequence Information Leveraging a Service-Oriented Architecture: a Prototype.
Proceedings of the AMIA 2014, 2014

Evaluation of need for ontologies to manage domain content for the Reportable Conditions Knowledge Management System.
Proceedings of the AMIA 2014, 2014

2013
Exploring the use of ontologies and automated reasoning to manage selection of reportable condition lab tests from LOINC.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013

Optimize Querying of LOINC® with an Ontology: Give Me the Chlamydia Tests the Epidemiologists Want Me to Use!
Proceedings of the 46th Hawaii International Conference on System Sciences, 2013

Using KaOS Ontologies to Model Policy Requirements for a Statewide Master Person Index.
Proceedings of the AMIA 2013, 2013

2012
Efforts toward a More Consistent and Interoperable Sequence Ontology.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Using GVF for Clinical Annotation of Personal Genomes.
Proceedings of the Workshop on Annotation, 2012

2011
Evolution of the Sequence Ontology terms and relationships.
J. Biomed. Informatics, 2011

The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data.
Appl. Ontology, 2011

2010
SOBA: sequence ontology bioinformatics analysis.
Nucleic Acids Res., 2010

2009
Quantitative measures for the management and comparison of annotated genomes.
BMC Bioinform., 2009

2008
The Protein Feature Ontology: a tool for the unification of protein feature annotations.
Bioinform., 2008

2001
GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data.
Proceedings of the 2nd IEEE International Symposium on Bioinformatics and Bioengineering, 2001

2000
Conceptual modelling of genomic information.
Bioinform., 2000

1999
INTERACT: An Object Oriented Protein-Protein Interaction Database.
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

Straight-Line Drawings of Protein Interactions.
Proceedings of the Graph Drawing, 7th International Symposium, 1999


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