James C. Schaff

According to our database1, James C. Schaff authored at least 21 papers between 1998 and 2023.

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Bibliography

2023
SBML level 3 package: spatial processes, version 1, release 1.
J. Integr. Bioinform., March, 2023

2022
BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Nucleic Acids Res., 2022

2019
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
J. Integr. Bioinform., 2019

2018
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.
J. Integr. Bioinform., 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.
J. Integr. Bioinform., 2018

2016
Numerical Approach to Spatial Deterministic-Stochastic Models Arising in Cell Biology.
PLoS Comput. Biol., 2016

Rule-based modeling with Virtual Cell.
Bioinform., 2016

2015
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.
J. Integr. Bioinform., 2015

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions.
J. Integr. Bioinform., 2015

WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration.
BMC Bioinform., 2015

2014
Pathway Commons at Virtual Cell: use of pathway data for mathematical modeling.
Bioinform., 2014

2011
Virtual NEURON: a strategy for merged biochemical and electrophysiological modeling.
J. Comput. Neurosci., 2011

2010
Modeling without Borders: Creating and Annotating VCell Models Using the Web.
Proceedings of the Bioinformatics Research and Applications, 6th International Symposium, 2010

2007
Diffusion on a curved surface coupled to diffusion in the volume: Application to cell biology.
J. Comput. Phys., 2007

Kinetic Modeling Using BioPAX Ontology.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

2006
Think simulation - think experiment: the virtual cell paradigm.
Proceedings of the Winter Simulation Conference WSC 2006, 2006

2003
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Bioinform., 2003

1999
The Virtual Cell.
Proceedings of the 4th Pacific Symposium on Biocomputing, 1999

A Distributed Architecture for a General Cellular Modeling and Simulation Framework.
Proceedings of the 12th IEEE Symposium on Computer-Based Medical Systems (CBMS '99). 18-20 June 1999, 1999

Ultrasound Image Deconvolution Using Adaptive Inverse Filtering.
Proceedings of the 12th IEEE Symposium on Computer-Based Medical Systems (CBMS '99). 18-20 June 1999, 1999

1998
Virtual Cell: A General Framework for Simulating and Visualizing Cellular Physiology.
Proceedings of the Visual Database Systems 4 (VDB4), 1998


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