Chris Upton

Orcid: 0000-0002-9019-8967

According to our database1, Chris Upton authored at least 17 papers between 2000 and 2021.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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Links

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Bibliography

2021
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Briefings Bioinform., 2021

2014
Incongruencies in Vaccinia Virus Phylogenetic Trees.
Comput., 2014

2009
Suffix trees for very large genomic sequences.
Proceedings of the 18th ACM Conference on Information and Knowledge Management, 2009

2008
A graph approach to the threshold all-against-all substring matching problem.
ACM J. Exp. Algorithmics, 2008

A new method for indexing genomes using on-disk suffix trees.
Proceedings of the 17th ACM Conference on Information and Knowledge Management, 2008

2007
GraphDNA: a Java program for graphical display of DNA composition analyses.
BMC Bioinform., 2007

Shortest Path Approaches for the Longest Common Subsequence of a Set of Strings.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
Java GUI for InterProScan (JIPS): A tool to help process multiple InterProScans and perform ortholog analysis.
BMC Bioinform., 2006

Predicted function of the vaccinia virus G5R protein.
Bioinform., 2006

A New Algorithm for Fast All-Against-All Substring Matching.
Proceedings of the String Processing and Information Retrieval, 2006

2005
Poxvirus Bioinformatics Resource Center: a comprehensive <i>Poxviridae</i> informational and analytical resource.
Nucleic Acids Res., 2005

Recent Hits Acquired by BLAST (ReHAB): A tool to identify new hits in sequence similarity searches.
BMC Bioinform., 2005

2004
Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments.
BMC Bioinform., 2004

JDotter: a Java interface to multiple dotplots generated by dotter.
Bioinform., 2004

2002
Poxvirus Orthologous Clusters (POCs).
Bioinform., 2002

2000
Viral Genome DataBase: storing and analyzing genes and proteins from complete viral genomes.
Bioinform., 2000

BLAST Search Updater: a notification system for new database matches.
Bioinform., 2000


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