Eric P. Nawrocki

According to our database, Eric P. Nawrocki authored at least 18 papers between 2007 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Automated annotation and validation of human respiratory virus sequences using VADR.

Jeffrey Furlong, Stephanie Goya, Eric P. Nawrocki, Vincent C. Calhoun, Eneida Hatcher, Linda Yankie, Alexander L. Greninger

Database J. Biol. Databases Curation, 2025

2024

Influenza sequence validation and annotation using VADR.

Vincent C. Calhoun, Eneida L. Hatcher, Linda Yankie, Eric P. Nawrocki

Database J. Biol. Databases Curation, January, 2024

2022

Rapid automated validation, annotation and publication of SARS-CoV-2 sequences to GenBank.

Beverly A. Underwood, Linda Yankie, Eric P. Nawrocki, Vasuki Palanigobu, Sergiy Gotvyanskyy, Vincent D. Calhoun, Michael Kornbluh, Thomas G. Smith, Lydia Fleischmann, Denis Sinyakov, Colleen J. Bollin, Ilene Karsch-Mizrachi

Database J. Biol. Databases Curation, 2022

2021

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases.

Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg

Nucleic Acids Res., 2021

Rfam 14: expanded coverage of metagenomic, viral and microRNA families.

Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov

Nucleic Acids Res., 2021

Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation.

Alejandro A. Schäffer, Richard McVeigh, Barbara Robbertse, Conrad L. Schoch, Anjanette Johnston, Beverly A. Underwood, Ilene Karsch-Mizrachi, Eric P. Nawrocki

BMC Bioinform., 2021

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.

Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz

Briefings Bioinform., 2021

2020

VADR: validation and annotation of virus sequence submissions to GenBank.

Alejandro A. Schäffer, Eneida Hatcher, Linda Yankie, Lara Shonkwiler, J. Rodney Brister, Ilene Karsch-Mizrachi, Eric P. Nawrocki

BMC Bioinform., 2020

2018

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families.

Ioanna Kalvari, Joanna Argasinska, Natalia Quinones-Olvera, Eric P. Nawrocki, Elena Rivas, Sean R. Eddy, Alex Bateman, Robert D. Finn, Anton I. Petrov

Nucleic Acids Res., 2018

VecScreen_plus_taxonomy: imposing a tax(onomy) increase on vector contamination screening.

Alejandro A. Schäffer, Eric P. Nawrocki, Yoon Choi, Paul A. Kitts, Ilene Karsch-Mizrachi, Richard McVeigh

Bioinform., 2018

2017

Virus Variation Resource - improved response to emergent viral outbreaks.

Eneida Hatcher, Sergey A. Zhdanov, Yiming Bao, Olga Blinkova, Eric P. Nawrocki, Yuri Ostapchuck, Alejandro A. Schäffer, J. Rodney Brister

Nucleic Acids Res., 2017

2015

Rfam 12.0: updates to the RNA families database.

Eric P. Nawrocki, Sarah W. Burge, Alex Bateman, Jennifer Daub, Ruth Y. Eberhardt, Sean R. Eddy, Evan W. Floden, Paul P. Gardner, Thomas A. Jones, John G. Tate, Robert D. Finn

Nucleic Acids Res., 2015

2013

Rfam 11.0: 10 years of RNA families.

Sarah W. Burge, Jennifer Daub, Ruth Y. Eberhardt, John G. Tate, Lars Barquist, Eric P. Nawrocki, Sean R. Eddy, Paul P. Gardner, Alex Bateman

Nucleic Acids Res., 2013

Infernal 1.1: 100-fold faster RNA homology searches.

Eric P. Nawrocki, Sean R. Eddy

Bioinform., 2013

2011

Rfam: Wikipedia, clans and the "decimal" release.

Paul P. Gardner, Jennifer Daub, John G. Tate, Benjamin L. Moore, Isabelle H. Osuch, Sam Griffiths-Jones, Robert D. Finn, Eric P. Nawrocki, Diana L. Kolbe, Sean R. Eddy, Alex Bateman

Nucleic Acids Res., 2011

2009

Rfam: updates to the RNA families database.

Paul P. Gardner, Jennifer Daub, John G. Tate, Eric P. Nawrocki, Diana L. Kolbe, Stinus Lindgreen, Adam C. Wilkinson, Robert D. Finn, Sam Griffiths-Jones, Sean R. Eddy, Alex Bateman

Nucleic Acids Res., 2009

Infernal 1.0: inference of RNA alignments.

Eric P. Nawrocki, Diana L. Kolbe, Sean R. Eddy

Bioinform., 2009

2007

Query-Dependent Banding (QDB) for Faster RNA Similarity Searches.

Eric P. Nawrocki, Sean R. Eddy

PLoS Comput. Biol., 2007