Stefan Hoops

According to our database1, Stefan Hoops authored at least 33 papers between 2006 and 2024.

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Bibliography

2024
A Large-Scale Epidemic Simulation Framework for Realistic Social Contact Networks.
CoRR, 2024

2023
Augmenting the Social Vulnerability Index using an agent-based simulation of Hurricane Harvey.
Comput. Environ. Urban Syst., October, 2023

Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support.
Int. J. High Perform. Comput. Appl., 2023

Synthetic Information and Digital Twins for Pandemic Science: Challenges and Opportunities.
Proceedings of the 5th IEEE International Conference on Trust, 2023

2022
BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Nucleic Acids Res., 2022

BioSimulators: a central registry of simulation engines and services for recommending specific tools.
CoRR, 2022

Effective Social Network-Based Allocation of COVID-19 Vaccines.
Proceedings of the KDD '22: The 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, Washington, DC, USA, August 14, 2022

2021
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Briefings Bioinform., 2021


Scalable Epidemiological Workflows to Support COVID-19 Planning and Response.
Proceedings of the 35th IEEE International Parallel and Distributed Processing Symposium, 2021

AI-Driven Agent-Based Models to Study the Role of Vaccine Acceptance in Controlling COVID-19 Spread in the US.
Proceedings of the 2021 IEEE International Conference on Big Data (Big Data), 2021

2019
PlantSimLab - a modeling and simulation web tool for plant biologists.
BMC Bioinform., December, 2019

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
J. Integr. Bioinform., 2019

2018
JigCell Model Connector: building large molecular network models from components.
Simul., 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.
J. Integr. Bioinform., 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.
J. Integr. Bioinform., 2018

2015
Multiscale modeling of mucosal immune responses.
BMC Bioinform., December, 2015

ENISI SDE: A New Web-Based Tool for Modeling Stochastic Processes.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015

SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3.
J. Integr. Bioinform., 2015

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.
J. Integr. Bioinform., 2015

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions.
J. Integr. Bioinform., 2015

JigCell Run Manager (JC-RM): a tool for managing large sets of biochemical model parametrizations.
BMC Syst. Biol., 2015

Supervised learning methods in modeling of CD4+ T cell heterogeneity.
BioData Min., 2015

ENISI multiscale modeling of mucosal immune responses driven by high performance computing.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
Multistate Model Builder (MSMB): a flexible editor for compact biochemical models.
BMC Syst. Biol., 2014

ENISI MSM: A novel multi-scale modeling platform for computational immunology.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013
Systems Modeling of Molecular Mechanisms Controlling Cytokine-driven CD4+ T Cell Differentiation and Phenotype Plasticity.
PLoS Comput. Biol., 2013

2012
Condor-COPASI: high-throughput computing for biochemical networks.
BMC Syst. Biol., 2012

High-Performance Interaction-Based Simulation of Gut Immunopathologies with ENteric Immunity Simulator (ENISI).
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium, 2012

ENISI Visual, an agent-based simulator for modeling gut immunity.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

2011
Minimum Information About a Simulation Experiment (MIASE).
PLoS Comput. Biol., 2011

2006
COPASI - a COmplex PAthway SImulator.
Bioinform., 2006

Simulation of biochemical networks using COPASI: a complex pathway simulator.
Proceedings of the Winter Simulation Conference WSC 2006, 2006


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