Inge Jonassen

According to our database, Inge Jonassen authored at least 43 papers between 1991 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

SeeCiTe: a method to assess CNV calls from SNP arrays using trio data.

Ksenia Lavrichenko, Øyvind Helgeland, Pål R. Njølstad, Inge Jonassen, Stefan Johansson

Bioinform., 2021

2020

RASflow: an RNA-Seq analysis workflow with Snakemake.

Xiaokang Zhang, Inge Jonassen

BMC Bioinform., 2020

Reconstructing ribosomal genes from large scale total RNA meta-transcriptomic data.

Yaxin Xue, Anders Lanzén, Inge Jonassen

Bioinform., 2020

2019

A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-Treated Atlantic Cod (Gadus Morhua) Liver.

Xiaokang Zhang, Inge Jonassen

Proceedings of the Nordic Artificial Intelligence Research and Development, 2019

An Ensemble Feature Selection Framework Integrating Stability.

Xiaokang Zhang, Inge Jonassen

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018

Norwegian e-Infrastructure for Life Sciences (NeLS).

Kidane M. Tekle, Sveinung Gundersen, Kjetil Klepper, Lars Ailo Bongo, Inge Alexander Raknes, Xiaxi Li, Wei Zhang, Christian Andreetta, Teshome Dagne Mulugeta, Matús Kalas, Morten B. Rye, Erik Hjerde, Jeevan Karloss Antony Samy, Ghislain Fornous, Abdulrahman Azab, Dag Inge Våge, Eivind Hovig, Nils Peder Willassen, Finn Drabløs, Ståle Nygård, Kjell Petersen, Inge Jonassen

F1000Research, 2018

EFSIS: Ensemble Feature Selection Integrating Stability.

Xiaokang Zhang, Inge Jonassen

CoRR, 2018

Deblender: a semi-/unsupervised multi-operational computational method for complete deconvolution of expression data from heterogeneous samples.

Konstantina Dimitrakopoulou, Elisabeth Wik, Lars A. Akslen, Inge Jonassen

BMC Bioinform., 2018

2016

RareVariantVis: new tool for visualization of causative variants in rare monogenic disorders using whole genome sequencing data.

Tomasz Stokowy, Mateusz Garbulowski, Torunn Fiskerstrand, Rita Holdhus, Kornel Labun, Pawel Sztromwasser, Christian Gilissen, Alexander Hoischen, Gunnar Houge, Kjell Petersen, Inge Jonassen, Vidar M. Steen

Bioinform., 2016

2013

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats.

Jon C. Ison, Matús Kalas, Inge Jonassen, Dan M. Bolser, Mahmut Uludag, Hamish McWilliam, James Malone, Rodrigo Lopez, Steve Pettifer, Peter M. Rice

Bioinform., 2013

Filtering duplicate reads from 454 pyrosequencing data.

Susanne Balzer, Ketil Malde, Markus A. Grohme, Inge Jonassen

Bioinform., 2013

2011

Exploring the limits of fold discrimination by structural alignment: A large scale benchmark using decoys of known fold.

Siv Midtun Hollup, Michael I. Sadowski, Inge Jonassen, William R. Taylor

Comput. Biol. Chem., 2011

Characteristics of 454 pyrosequencing data - enabling realistic simulation with flowsim.

Susanne Balzer, Ketil Malde, Anders Lanzén, Animesh Sharma, Inge Jonassen

Bioinform., 2011

Systematic exploration of error sources in pyrosequencing flowgram data.

Susanne Balzer, Ketil Malde, Inge Jonassen

Bioinform., 2011

2010

The EMBRACE web service collection.

Steve Pettifer, Jon C. Ison, Matús Kalas, Dave Thorne, Philip McDermott, Inge Jonassen, Ali Liaquat, José María Fernández, Jose Manuel Rodriguez, David G. Pisano, Christophe Blanchet, Mahmut Uludag, Peter M. Rice, Edita Bartaseviciute, Kristoffer Rapacki, Maarten L. Hekkelman, Olivier Sand, Heinz Stockinger, Andrew B. Clegg, Erik Bongcam-Rudloff, Jean Salzemann, Vincent Breton, Teresa K. Attwood, Graham Cameron, Gert Vriend

Nucleic Acids Res., 2010

BioXSD: the common data-exchange format for everyday bioinformatics web services.

Matús Kalas, Pål Puntervoll, Alexandre Joseph, Edita Bartaseviciute, Armin Töpfer, Prabakar Venkataraman, Steve Pettifer, Jan Christian Bryne, Jon C. Ison, Christophe Blanchet, Kristoffer Rapacki, Inge Jonassen

Bioinform., 2010

2008

The BREW workshop series: a stimulating experience in PhD education.

Robert Giegerich, Alvis Brazma, Inge Jonassen, Esko Ukkonen, Martin Vingron

Briefings Bioinform., 2008

2007

TMM@: a web application for the analysis of transmembrane helix mobility.

Lars Skjaerven, Inge Jonassen, Nathalie Reuter

BMC Bioinform., 2007

2006

Protein model refinement using structural fragment tessellation.

Inge Jonassen, Daniel Klose, William R. Taylor

Comput. Biol. Chem., 2006

RBR: library-less repeat detection for ESTs.

Ketil Malde, Korbinian Schneeberger, Eivind Coward, Inge Jonassen

Bioinform., 2006

2005

Guest Editorial: WABI Special Section Part II.

Junhyong Kim, Inge Jonassen

IEEE ACM Trans. Comput. Biol. Bioinform., 2005

A graph based algorithm for generating EST consensus sequences.

Ketil Malde, Eivind Coward, Inge Jonassen

Bioinform., 2005

Integrative Models for the Prediction and Understanding of Protein Structure Patterns.

Inge Jonassen

Proceedings of the Data Analysis and Visualization in Genomics and Proteomics, 2005

2004

Guest Editorial: WABI Special Section Part 1.

Junhyong Kim, Inge Jonassen

IEEE ACM Trans. Comput. Biol. Bioinform., 2004

XHM: A system for detection of potential cross hybridizations in DNA microarrays.

Kristian Flikka, Fekadu Yadetie, Astrid Lægreid, Inge Jonassen

BMC Bioinform., 2004

Protein bioinformatics - an algorithmic approach to sequence and structure analysis.

Ingvar Eidhammer, Inge Jonassen, William R. Taylor

Wiley, ISBN: 978-0-470-84839-5, 2004

2003

Tumor classification and marker gene prediction by feature selection and fuzzy c-means clustering using microarray data.

Junbai Wang, Trond Hellem Bø, Inge Jonassen, Ola Myklebost, Eivind Hovig

BMC Bioinform., 2003

Fast Sequence Clustering Using A Suffix Array Algorithm.

Ketil Malde, Eivind Coward, Inge Jonassen

Bioinform., 2003

2002

Structure motif discovery and mining the PDB.

Inge Jonassen, Ingvar Eidhammer, Darrell Conklin, William R. Taylor

Bioinform., 2002

Association of nucleotide patterns with gene function classes: application to human 3' untranslated sequences.

Darrell Conklin, Inge Jonassen, Rein Aasland, William R. Taylor

Bioinform., 2002

A fast top-down method for constructing reliable radiation hybrid frameworks.

Trond Hellem Bø, Inge Jonassen, Ingvar Eidhammer, Carsten Helgesen

Bioinform., 2002

2001

The InterPro database, an integrated documentation resource for protein families, domains and functional sites.

Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov

Nucleic Acids Res., 2001

A Constraint Based Structure Description Language for Biosequences.

Ingvar Eidhammer, Inge Jonassen, Svenn Helge Grindhaug, David R. Gilbert, Madu Ratnayake

Constraints An Int. J., 2001

J-Express: exploring gene expression data using Java.

B. Dysvik, Inge Jonassen

Bioinform., 2001

2000

Structure Comparison and Structure Patterns.

Ingvar Eidhammer, Inge Jonassen, William R. Taylor

J. Comput. Biol., 2000

InterPro-an integrated documentation resource for protein families, domains and functional sites.

Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov

Bioinform., 2000

Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data.

Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Robinson, Esko Ukkonen

Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

1998

Approaches to the Automatic Discovery of Patterns in Biosequences.

Alvis Brazma, Inge Jonassen, Ingvar Eidhammer, David R. Gilbert

J. Comput. Biol., 1998

Pattern Discovery in Biosequences.

Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen

Proceedings of the Grammatical Inference, 4th International Colloquium, 1998

Predicting gene regulatory elements from their expression data in the complete yeast genome.

Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen

Proceedings of the German Conference on Bioinformatics, 1998

1997

Efficient discovery of conserved patterns using a pattern graph.

Inge Jonassen

Comput. Appl. Biosci., 1997

1996

Discovering Patterns and Subfamilies in Biosequences.

Alvis Brazma, Inge Jonassen, Esko Ukkonen, Jaak Vilo

Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996

1991

A comparison of splitting methods for the identification of corner-points.

Rune Espelid, Inge Jonassen

Pattern Recognit. Lett., 1991