Martin Krallinger

According to our database1, Martin Krallinger authored at least 38 papers between 2004 and 2019.

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Bibliography

2019
Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm.
J. Cheminformatics, 2019

BVS Corpus: A Multilingual Parallel Corpus of Biomedical Scientific Texts.
CoRR, 2019

BSC Participation in the WMT Translation of Biomedical Abstracts.
Proceedings of the Fourth Conference on Machine Translation, 2019

Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies.
Proceedings of the Fourth Conference on Machine Translation, 2019

Automatic De-identification of Medical Texts in Spanish: the MEDDOCAN Track, Corpus, Guidelines, Methods and Evaluation of Results.
Proceedings of the Iberian Languages Evaluation Forum co-located with 35th Conference of the Spanish Society for Natural Language Processing, 2019

PharmaCoNER: Pharmacological Substances, Compounds and proteins Named Entity Recognition track.
Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, 2019

2018
Construcción de recursos terminológicos médicos para el espa˜nol: el sistema de extracción de términos CUTEXT y los repositorios de términos biomédicos.
Procesamiento del Lenguaje Natural, 2018

Finding Mentions of Abbreviations and Their Definitions in Spanish Clinical Cases: The BARR2 Shared Task Evaluation Results.
Proceedings of the Third Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2018) co-located with 34th Conference of the Spanish Society for Natural Language Processing (SEPLN 2018), 2018

2017
Esfuerzos para fomentar la minería de textos en biomedicina más allá del inglés: el plan estratégico nacional español para las tecnologías del lenguaje.
Procesamiento del Lenguaje Natural, 2017

LimTox: a web tool for applied text mining of adverse event and toxicity associations of compounds, drugs and genes.
Nucleic Acids Research, 2017

The Biomedical Abbreviation Recognition and Resolution (BARR) Track: Benchmarking, Evaluation and Importance of Abbreviation Recognition Systems Applied to Spanish Biomedical Abstracts.
Proceedings of the Second Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2017) co-located with 33th Conference of the Spanish Society for Natural Language Processing (SEPLN 2017), 2017

CNIO at BARR IberEval 2017: Exploring Three Biomedical Abbreviation Identifiers for Spanish Biomedical Publications.
Proceedings of the Second Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2017) co-located with 33th Conference of the Spanish Society for Natural Language Processing (SEPLN 2017), 2017

2016
The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge.
Database, 2016

Annotation Process, Guidelines and Text Corpus of Small Non-Coding RNA Molecules: the MiNCor for MicroRNA Annotations.
Proceedings of the 7th International Symposium on Semantic Mining in Biomedicine, 2016

2015
The CHEMDNER corpus of chemicals and drugs and its annotation principles.
J. Cheminformatics, 2015

CHEMDNER: The drugs and chemical names extraction challenge.
J. Cheminformatics, 2015

FUN-L: gene prioritization for RNAi screens.
Bioinformatics, 2015

2014
BioCreative-IV virtual issue.
Database, 2014

Retrieval and Discovery of Cell Cycle Literature and Proteins by Means of Machine Learning, Text Mining and Network Analysis.
Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014

2013
BioC: a minimalist approach to interoperability for biomedical text processing.
Database, 2013

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.
Database, 2013

Machine Reading of Biomedical Texts about Alzheimer's Disease.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013

2012
MyMiner: a web application for computer-assisted biocuration and text annotation.
Bioinformatics, 2012

BioCreative-2012 Virtual Issue.
Database, 2012

How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience.
Database, 2012

Text mining for the biocuration workflow.
Database, 2012

2011
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
BMC Bioinformatics, 2011

BioCreative III interactive task: an overview.
BMC Bioinformatics, 2011

Overview of the BioCreative III Workshop.
BMC Bioinformatics, 2011

2010
An Overview of BioCreative II.5.
IEEE/ACM Trans. Comput. Biology Bioinform., 2010

The PPI affix dictionary (PPIAD) and BioMethod Lexicon: importance of affixes and tags for recognition of entity mentions and experimental protein interactions.
BMC Bioinformatics, 2010

Importance of negations and experimental qualifiers in biomedical literature.
Proceedings of the Workshop on Negation and Speculation in Natural Language Processing, 2010

2009
PLAN2L: a web tool for integrated text mining and literature-based bioentity relation extraction.
Nucleic Acids Research, 2009

Extraction of human kinase mutations from literature, databases and genotyping studies.
BMC Bioinformatics, 2009

2006
Refactoring Corpora.
Proceedings of the Workshop on Linking Natural Language and Biology, 2006

2005
A sentence sliding window approach to extract protein annotations from biomedical articles.
BMC Bioinformatics, 2005

Evaluation of BioCreAtIvE assessment of task 2.
BMC Bioinformatics, 2005

2004
Assessing the Correlation between Contextual Patterns and Biological Entity Tagging.
Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications, 2004


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