Martin Krallinger
Orcid: 0000-0002-2646-8782
According to our database1,
Martin Krallinger
authored at least 72 papers
between 2004 and 2024.
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Bibliography
2024
BioASQ at CLEF2024: The Twelfth Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge.
Proceedings of the Advances in Information Retrieval, 2024
2023
MEDDOPLACE Shared Task overview: recognition, normalization and classification of locations and patient movement in clinical texts.
Proces. del Leng. Natural, 2023
Overview of DrugProt task at BioCreative VII: data and methods for large-scale text mining and knowledge graph generation of heterogenous chemical-protein relations.
Database J. Biol. Databases Curation, 2023
BioASQ at CLEF2023: The Eleventh Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge.
Proceedings of the Advances in Information Retrieval, 2023
Overview of BioASQ 2023: The Eleventh BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering.
Proceedings of the Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2023
Overview of MedProcNER Task on Medical Procedure Detection and Entity Linking at BioASQ 2023.
Proceedings of the Working Notes of the Conference and Labs of the Evaluation Forum (CLEF 2023), 2023
2022
Mention detection, normalization & classification of species, pathogens, humans and food in clinical documents: Overview of the LivingNER shared task and resources.
Proces. del Leng. Natural, 2022
Challenges and opportunities for mining adverse drug reactions: perspectives from pharma, regulatory agencies, healthcare providers and consumers.
Database J. Biol. Databases Curation, 2022
Overview of the COVID-19 text mining tool interactive demonstration track in BioCreative VII.
Database J. Biol. Databases Curation, 2022
Findings of the WMT 2022 Biomedical Translation Shared Task: Monolingual Clinical Case Reports.
Proceedings of the Seventh Conference on Machine Translation, 2022
BioASQ at CLEF2022: The Tenth Edition of the Large-scale Biomedical Semantic Indexing and Question Answering Challenge.
Proceedings of the Advances in Information Retrieval, 2022
Overview of the Seventh Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2022.
Proceedings of The Seventh Workshop on Social Media Mining for Health Applications, 2022
The SocialDisNER shared task on detection of disease mentions in health-relevant content from social media: methods, evaluation, guidelines and corpora.
Proceedings of The Seventh Workshop on Social Media Mining for Health Applications, 2022
Overview of BioASQ 2022: The Tenth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering.
Proceedings of the Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2022
Overview of DisTEMIST at BioASQ: Automatic detection and normalization of diseases from clinical texts: results, methods, evaluation and multilingual resources.
Proceedings of the Working Notes of CLEF 2022 - Conference and Labs of the Evaluation Forum, Bologna, Italy, September 5th - to, 2022
2021
NLP applied to occupational health: MEDDOPROF shared task at IberLEF 2021 on automatic recognition, classification and normalization of professions and occupations from medical texts.
Proces. del Leng. Natural, 2021
ECO-CollecTF: A Corpus of Annotated Evidence-Based Assertions in Biomedical Manuscripts.
Frontiers Res. Metrics Anal., 2021
Spanish Biomedical Crawled Corpus: A Large, Diverse Dataset for Spanish Biomedical Language Models.
CoRR, 2021
The ProfNER shared task on automatic recognition of occupation mentions in social media: systems, evaluation, guidelines, embeddings and corpora.
Proceedings of the Sixth Social Media Mining for Health Workshop and Shared Task, 2021
Overview of the Sixth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at NAACL 2021.
Proceedings of the Sixth Social Media Mining for Health Workshop and Shared Task, 2021
Proceedings of the Advances in Information Retrieval, 2021
Overview of BioASQ 2021: The Ninth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering.
Proceedings of the Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2021
Overview of BioASQ 2021-MESINESP track. Evaluation of advance hierarchical classification techniques for scientific literature, patents and clinical trials.
Proceedings of the Working Notes of CLEF 2021 - Conference and Labs of the Evaluation Forum, Bucharest, Romania, September 21st - to, 2021
2020
Named Entity Recognition, Concept Normalization and Clinical Coding: Overview of the Cantemist Track for Cancer Text Mining in Spanish, Corpus, Guidelines, Methods and Results.
Proceedings of the Iberian Languages Evaluation Forum (IberLEF 2020) co-located with 36th Conference of the Spanish Society for Natural Language Processing (SEPLN 2020), 2020
Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) joint with the 10th Workshop on Ontologies and Data in Life Sciences (ODLS) and part of the Bolzano Summer of Knowledge (BoSK 2020), 2020
Proceedings of the Advances in Information Retrieval, 2020
Proceedings of the Advances in Information Retrieval, 2020
Report of the First International Workshop on Semantic Indexing and Information Retrieval for Health from heterogeneous content types and languages.
Proceedings of the Workshop on Semantic Indexing and Information Retrieval for Health from heterogeneous content types and languages co-located with 42nd European Conference on Information Retrieval, 2020
Proposal of the First International Workshop on Semantic Indexing and Information Retrieval for Health from Heterogeneous Content Types and Languages (SIIRH).
Proceedings of the Advances in Information Retrieval, 2020
Proceedings of the Working Notes of CLEF 2020, 2020
Overview of BioASQ 2020: The Eighth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering.
Proceedings of the Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2020
Overview of Automatic Clinical Coding: Annotations, Guidelines, and Solutions for non-English Clinical Cases at CodiEsp Track of CLEF eHealth 2020.
Proceedings of the Working Notes of CLEF 2020, 2020
Proceedings of the Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2020
2019
Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm.
J. Cheminformatics, 2019
CoRR, 2019
Proceedings of the Fourth Conference on Machine Translation, 2019
Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies.
Proceedings of the Fourth Conference on Machine Translation, 2019
Automatic De-identification of Medical Texts in Spanish: the MEDDOCAN Track, Corpus, Guidelines, Methods and Evaluation of Results.
Proceedings of the Iberian Languages Evaluation Forum co-located with 35th Conference of the Spanish Society for Natural Language Processing, 2019
PharmaCoNER: Pharmacological Substances, Compounds and proteins Named Entity Recognition track.
Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, 2019
2018
Construcción de recursos terminológicos médicos para el espa˜nol: el sistema de extracción de términos CUTEXT y los repositorios de términos biomédicos.
Proces. del Leng. Natural, 2018
Finding Mentions of Abbreviations and Their Definitions in Spanish Clinical Cases: The BARR2 Shared Task Evaluation Results.
Proceedings of the Third Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2018) co-located with 34th Conference of the Spanish Society for Natural Language Processing (SEPLN 2018), 2018
2017
Esfuerzos para fomentar la minería de textos en biomedicina más allá del inglés: el plan estratégico nacional español para las tecnologías del lenguaje.
Proces. del Leng. Natural, 2017
LimTox: a web tool for applied text mining of adverse event and toxicity associations of compounds, drugs and genes.
Nucleic Acids Res., 2017
The Biomedical Abbreviation Recognition and Resolution (BARR) Track: Benchmarking, Evaluation and Importance of Abbreviation Recognition Systems Applied to Spanish Biomedical Abstracts.
Proceedings of the Second Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2017) co-located with 33th Conference of the Spanish Society for Natural Language Processing (SEPLN 2017), 2017
CNIO at BARR IberEval 2017: Exploring Three Biomedical Abbreviation Identifiers for Spanish Biomedical Publications.
Proceedings of the Second Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2017) co-located with 33th Conference of the Spanish Society for Natural Language Processing (SEPLN 2017), 2017
2016
The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge.
Database J. Biol. Databases Curation, 2016
Annotation Process, Guidelines and Text Corpus of Small Non-Coding RNA Molecules: the MiNCor for MicroRNA Annotations.
Proceedings of the 7th International Symposium on Semantic Mining in Biomedicine, 2016
2015
J. Cheminformatics, 2015
J. Cheminformatics, 2015
2014
Retrieval and Discovery of Cell Cycle Literature and Proteins by Means of Machine Learning, Text Mining and Network Analysis.
Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014
2013
Database J. Biol. Databases Curation, 2013
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.
Database J. Biol. Databases Curation, 2013
Proceedings of the Working Notes for CLEF 2013 Conference , 2013
2012
Bioinform., 2012
How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience.
Database J. Biol. Databases Curation, 2012
2011
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
BMC Bioinform., 2011
2010
The PPI affix dictionary (PPIAD) and BioMethod Lexicon: importance of affixes and tags for recognition of entity mentions and experimental protein interactions.
BMC Bioinform., 2010
Proceedings of the Workshop on Negation and Speculation in Natural Language Processing, 2010
2009
PLAN2L: a web tool for integrated text mining and literature-based bioentity relation extraction.
Nucleic Acids Res., 2009
Extraction of human kinase mutations from literature, databases and genotyping studies.
BMC Bioinform., 2009
2006
Proceedings of the Workshop on Linking Natural Language and Biology, 2006
2005
A sentence sliding window approach to extract protein annotations from biomedical articles.
BMC Bioinform., 2005
Applications of Text Mining in Molecular Biology, from Name Recognition to Protein Interaction Maps.
Proceedings of the Data Analysis and Visualization in Genomics and Proteomics, 2005
2004
Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications, 2004