Emmanuel Barillot
Orcid: 0000-0003-2724-2002
According to our database1,
Emmanuel Barillot
authored at least 78 papers
between 1998 and 2022.
Collaborative distances:
Collaborative distances:
Timeline
Legend:
Book In proceedings Article PhD thesis Dataset OtherLinks
Online presence:
On csauthors.net:
Bibliography
2022
BIODICA: a computational environment for Independent Component Analysis of omics data.
Bioinform., 2022
2021
Personalized logical models to investigate cancer response to BRAF treatments in melanomas and colorectal cancers.
PLoS Comput. Biol., 2021
2020
Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network.
PLoS Comput. Biol., 2020
Entropy, 2020
Trajectories, bifurcations and pseudotime in large clinical datasets: applications to myocardial infarction and diabetes data.
CoRR, 2020
BMC Bioinform., 2020
Bioinform., 2020
2019
Metabolic and signalling network maps integration: application to cross-talk studies and omics data analysis in cancer.
BMC Bioinform., 2019
PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling.
Bioinform., 2019
Assessing reproducibility of matrix factorization methods in independent transcriptomes.
Bioinform., 2019
Conceptual and computational framework for logical modelling of biological networks deregulated in diseases.
Briefings Bioinform., 2019
Briefings Bioinform., 2019
2018
Robust and scalable learning of data manifolds with complex topologies via ElPiGraph.
CoRR, 2018
QuantumClone: clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction.
Bioinform., 2018
Database J. Biol. Databases Curation, 2018
Application of Independent Component Analysis to Tumor Transcriptomes Reveals Specific and Reproducible Immune-Related Signals.
Proceedings of the Latent Variable Analysis and Signal Separation, 2018
2017
NaviCom: a web application to create interactive molecular network portraits using multi-level omics data.
Database J. Biol. Databases Curation, 2017
2016
Calculating Biological Module Enrichment or Depletion and Visualizing Data on Large-scale Molecular Maps with ACSNMineR and RNaviCell Packages.
R J., 2016
SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability.
Bioinform., 2016
2015
Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration.
PLoS Comput. Biol., 2015
DeDaL: Cytoscape 3 app for producing and morphing data-driven and structure-driven network layouts.
BMC Syst. Biol., 2015
2014
Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data.
Bioinform., 2014
2013
Synthetic Lethality between Gene Defects Affecting a Single Non-essential Molecular Pathway with Reversible Steps.
PLoS Comput. Biol., 2013
NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps.
BMC Syst. Biol., 2013
BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats.
BMC Syst. Biol., 2013
Bioinform., 2013
HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data.
Bioinform., 2013
2012
J. Bioinform. Comput. Biol., 2012
Continuous time boolean modeling for biological signaling: application of Gillespie algorithm.
BMC Syst. Biol., 2012
Bioinform., 2012
Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data.
Bioinform., 2012
2011
Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization.
Bioinform., 2011
2010
Mathematical Modelling of Cell-Fate Decision in Response to Death Receptor Engagement.
PLoS Comput. Biol., 2010
BMC Syst. Biol., 2010
SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data.
Bioinform., 2010
girafe - an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads.
Bioinform., 2010
2009
Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks.
Proceedings of the Workshops of the 5th IFIP Conference on Artificial Intelligence Applications & Innovations (AIAI-2009), 2009
2008
Regulatory network reconstruction using an integral additive model with flexible kernel functions.
BMC Syst. Biol., 2008
Bioinform., 2008
ITALICS: an algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays.
Bioinform., 2008
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008
2007
Bioinform., 2007
2006
ITTACA: a new database for integrated tumor transcriptome array and clinical data analysis.
Nucleic Acids Res., 2006
Mach. Vis. Appl., 2006
Bioinform., 2006
VAMP: Visualization and analysis of array-CGH, transcriptome and other molecular profiles.
Bioinform., 2006
2005
J. Bioinform. Comput. Biol., 2005
An algorithm for automatic evaluation of the spot quality in two-color DNA microarray experiments.
BMC Bioinform., 2005
2004
Bioinform., 2004
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004
2003
GénoPlante-Info (GPI): a collection of databases and bioinformatics resources for plant genomics.
Nucleic Acids Res., 2003
Nucleic Acids Res., 2003
2002
Proceedings of the International Database Engineering & Applications Symposium, 2002
2001
2000
Proceedings of the CHI '00 Extended Abstracts on Human Factors in Computing Systems, 2000
Proceedings of the working conference on Advanced visual interfaces, 2000
1999
Nucleic Acids Res., 1999
Proceedings of the 1999 International Database Engineering and Applications Symposium, 1999
1998
Nucleic Acids Res., 1998