Gautier Stoll

According to our database, Gautier Stoll authored at least 10 papers between 2006 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

Setting the basis of best practices and standards for curation and annotation of logical models in biology - highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.

Anna Niarakis, Martin Kuiper, Marek Ostaszewski, Rahuman S. Malik-Sheriff, Cristina Casals-Casas, Denis Thieffry, Tom C. Freeman, Paul D. Thomas, Vasundra Touré, Vincent Noël, Gautier Stoll, Julio Saez-Rodriguez, Aurélien Naldi, Eugenia Oshurko, Ioannis Xenarios, Sylvain Soliman, Claudine Chaouiya, Tomás Helikar, Laurence Calzone

Briefings Bioinform., 2021

2019

PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling.

Gaëlle Letort, Arnau Montagud, Gautier Stoll, Randy W. Heiland, Emmanuel Barillot, Paul Macklin, Andrei Yu. Zinovyev, Laurence Calzone

Bioinform., 2019

2017

MaBoSS 2.0: an environment for stochastic Boolean modeling.

Gautier Stoll, Barthélémy Caron, Eric Viara, Aurélien Dugourd, Andrei Yu. Zinovyev, Aurélien Naldi, Guido Kroemer, Emmanuel Barillot, Laurence Calzone

Bioinform., 2017

2013

BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats.

Eric Bonnet, Laurence Calzone, Daniel Rovera, Gautier Stoll, Emmanuel Barillot, Andrei Yu. Zinovyev

BMC Syst. Biol., 2013

2012

Continuous time boolean modeling for biological signaling: application of Gillespie algorithm.

Gautier Stoll, Eric Viara, Emmanuel Barillot, Laurence Calzone

BMC Syst. Biol., 2012

2011

Designing Logical Rules to Model the Response of Biomolecular Networks with Complex Interactions: An Application to Cancer Modeling.

Carito Guziolowski, Sylvain Blachon, Tatiana Baumuratova, Gautier Stoll, Ovidiu Radulescu, Anne Siegel

IEEE ACM Trans. Comput. Biol. Bioinform., 2011

2010

Localizing potentially active post-transcriptional regulations in the Ewing's sarcoma gene regulatory network.

Tatiana Baumuratova, Didier Surdez, Bernard Delyon, Gautier Stoll, Olivier Delattre, Ovidiu Radulescu, Anne Siegel

BMC Syst. Biol., 2010

Stabilizing patterning in the Drosophila segment polarity network by selecting models in silico.

Gautier Stoll, Mirko Bischofberger, Jacques Rougemont, Felix Naef

Biosyst., 2010

2009

Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks.

Sylvain Blachon, Gautier Stoll, Carito Guziolowski, Andrei Yu. Zinovyev, Emmanuel Barillot, Anne Siegel, Ovidiu Radulescu

Proceedings of the Workshops of the 5th IFIP Conference on Artificial Intelligence Applications & Innovations (AIAI-2009), 2009

2006

Few crucial links assure checkpoint efficiency in the yeast cell-cycle network.

Gautier Stoll, Jacques Rougemont, Felix Naef

Bioinform., 2006