Quim Aguado-Puig

According to our database, Quim Aguado-Puig authored at least 9 papers between 2021 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

Singletrack: an algorithm for improving memory consumption and performance of gap-affine sequence alignment.

Lorién López-Villellas, Cristian Iñiguez, Albert Jiménez-Blanco, Quim Aguado-Puig, Miquel Moretó, Jesús Alastruey-Benedé, Pablo Ibáñez, Santiago Marco-Sola

Bioinform., 2026

2025

QuickEd: high-performance exact sequence alignment based on bound-and-align.

Max Doblas, Oscar Lostes-Cazorla, Quim Aguado-Puig, Cristian Iñiguez, Miquel Moretó, Santiago Marco-Sola

Bioinform., 2025

2024

GenArchBench: A genomics benchmark suite for arm HPC processors.

Lorién López-Villellas, Rubén Langarita-Benítez, Asaf Badouh, Víctor Soria Pardos, Quim Aguado-Puig, Guillem López-Paradís, Max Doblas, Javier Setoain, Chulho Kim, Makoto Ono, Adrià Armejach, Santiago Marco-Sola, Jesús Alastruey-Benedé, Pablo Ibáñez, Miquel Moretó

Future Gener. Comput. Syst., 2024

BIMSA: accelerating long sequence alignment using processing-in-memory.

Alejandro Alonso-Marín, Ivan Fernandez, Quim Aguado-Puig, Juan Gómez-Luna, Santiago Marco-Sola, Onur Mutlu, Miquel Moretó

Bioinform., 2024

2023

WFA-GPU: gap-affine pairwise read-alignment using GPUs.

Quim Aguado-Puig, Max Doblas, Christos Matzoros, Antonio Espinosa, Juan Carlos Moure, Santiago Marco-Sola, Miquel Moretó

Bioinform., December, 2023

GMX: Instruction Set Extensions for Fast, Scalable, and Efficient Genome Sequence Alignment.

Max Doblas, Oscar Lostes-Cazorla, Quim Aguado-Puig, Nick Cebry, Pau Fontova-Musté, Christopher Frances Batten, Santiago Marco-Sola, Miquel Moretó

Proceedings of the 56th Annual IEEE/ACM International Symposium on Microarchitecture, 2023

2022

FPGA Acceleration of Pre-Alignment Filters for Short Read Mapping With HLS.

David Castells-Rufas, Santiago Marco-Sola, Juan Carlos Moure, Quim Aguado-Puig, Antonio Espinosa

IEEE Access, 2022

Accelerating Edit-Distance Sequence Alignment on GPU Using the Wavefront Algorithm.

Quim Aguado-Puig, Santiago Marco-Sola, Juan Carlos Moure, David Castells-Rufas, Lluc Alvarez, Antonio Espinosa, Miquel Moretó

IEEE Access, 2022

2021

OpenCL-based FPGA Accelerator for Semi-Global Approximate String Matching Using Diagonal Bit-Vectors.

David Castells-Rufas, Santiago Marco-Sola, Quim Aguado-Puig, Antonio Espinosa-Morales, Juan Carlos Moure, Lluc Alvarez, Miquel Moretó

Proceedings of the 31st International Conference on Field-Programmable Logic and Applications, 2021