Simon Kocbek

According to our database, Simon Kocbek authored at least 18 papers between 2007 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2020

Local Interpretability of Calibrated Prediction Models: A Case of Type 2 Diabetes Mellitus Screening Test.

Simon Kocbek, Primoz Kocbek, Leona Cilar, Gregor Stiglic

CoRR, 2020

2019

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services.

Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi

F1000Research, 2019

Using (Automated) Machine Learning and Drug Prescription Records to Predict Mortality and Polypharmacy in Older Type 2 Diabetes Mellitus Patients.

Simon Kocbek, Primoz Kocbek, Tina Zupanic, Gregor Stiglic, Bogdan Gabrys

Proceedings of the Neural Information Processing - 26th International Conference, 2019

Automated Machine Learning Techniques in Prognostics of Railway Track Defects.

Simon Kocbek, Bogdan Gabrys

Proceedings of the 2019 International Conference on Data Mining Workshops, 2019

2017

Extracting Disease-Phenotype Relations from Text with Disease-Phenotype Concept Recognisers and Association Rule Mining.

Simon Kocbek, Tudor Groza

Proceedings of the 30th IEEE International Symposium on Computer-Based Medical Systems, 2017

2016

Text mining electronic hospital records to automatically classify admissions against disease: Measuring the impact of linking data sources.

Simon Kocbek, Lawrence Cavedon, David Martínez, Christopher Bain, Chris Mac Manus, Gholamreza Haffari, Ingrid Zukerman, Karin Verspoor

J. Biomed. Informatics, 2016

Building a dictionary of lexical variants for phenotype descriptors.

Simon Kocbek, Tudor Groza

Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 2016

2014

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

Toshiaki Katayama, Mark D. Wilkinson, Kiyoko F. Aoki-Kinoshita, Shuichi Kawashima, Yasunori Yamamoto, Atsuko Yamaguchi, Shinobu Okamoto, Shin Kawano, Jin-Dong Kim, Yue Wang, Hongyan Wu, Yoshinobu Kano, Hiromasa Ono, Hidemasa Bono, Simon Kocbek, Jan Aerts, Yukie Akune, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Pier Luigi Buttigieg, Matthew P. Campbell, Yi-an Chen, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Alexandru Constantin

J. Biomed. Semant., 2014

Exploring Temporal Patterns in Emergency Department Triage Notes with Topic Models.

Simon Kocbek, Karin Verspoor, Wray L. Buntine

Proceedings of the Australasian Language Technology Association Workshop, 2014

2013

Visualizing ontology mappings to help ontology engineers identify relevant ontologies for their reuse.

Simon Kocbek, Jin-Dong Kim, Jean-Luc Perret, Patricia L. Whetzel

Proceedings of the 4th International Conference on Biomedical Ontology, 2013

2012

Visual Presentation of Mappings Between Biomedical Ontologies.

Simon Kocbek, Jean-Luc Perret, Jin-Dong Kim

Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

2011

AGRA: analysis of gene ranking algorithms.

Simon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun'ichi Tsujii

Bioinform., 2011

Tuning Decision Tree Models by Imposing Visual Constraints.

Gregor Stiglic, Simon Kocbek, Igor Pernek, Peter Kokol

Proceedings of the Machine Learning and Data Mining in Pattern Recognition, 2011

Poster: Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from PubMed publications.

Simon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun'ichi Tsujii

Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

2010

Stability of different feature selection methods for selecting protein sequence descriptors in protein solubility classification problem.

Simon Kocbek, Gregor Stiglic, Igor Pernek, Peter Kokol

Proceedings of the IEEE 23rd International Symposium on Computer-Based Medical Systems (CBMS 2010), 2010

2009

Unsupervised variance based preprocessing of microarray data.

Gregor Stiglic, Simon Kocbek, Peter Kokol

Proceedings of the Twenty-Second IEEE International Symposium on Computer-Based Medical Systems, 2009

2008

Sentiment in Science - A Case Study of CBMS Contributions in Years 2003 to 2007.

Mateja Verlic, Gregor Stiglic, Simon Kocbek, Peter Kokol

Proceedings of the Twenty-First IEEE International Symposium on Computer-Based Medical Systems, 2008

2007

Discovering new knowledge with advanced data mining tool.

Simon Kocbek, Primoz Kosec, Peter Kokol, Mitja Lenic, Matjaz Debevc

Proceedings of the 7th IEEE International Conference on Advanced Learning Technologies, 2007