Ikuo Uchiyama

According to our database, Ikuo Uchiyama authored at least 16 papers between 1994 and 2020.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2020

BioHackathon 2015: Semantics of data for life sciences and reproducible research.

Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi

F1000Research, 2020

2019

MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons.

Ikuo Uchiyama, Motohiro Mihara, Hiroyo Nishide, Hirokazu Chiba, Masaki Kato

Nucleic Acids Res., 2019

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services.

Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi

F1000Research, 2019

2017

SPANG: a SPARQL client supporting generation and reuse of queries for distributed RDF databases.

Hirokazu Chiba, Ikuo Uchiyama

BMC Bioinform., 2017

2016

The Orthology Ontology: development and applications.

Jesualdo Tomás Fernández-Breis, Hirokazu Chiba, María Del Carmen Legaz-García, Ikuo Uchiyama

J. Biomed. Semant., 2016

2015

MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data.

Ikuo Uchiyama, Motohiro Mihara, Hiroyo Nishide, Hirokazu Chiba

Nucleic Acids Res., 2015

Towards the Semantic Standardization of Orthology Content.

Jesualdo Tomás Fernández-Breis, María Del Carmen Legaz-García, Hirokazu Chiba, Ikuo Uchiyama

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

SPANG: A Command-line Client Supporting Query Generation for Distributed SPARQL Endpoints.

Hirokazu Chiba, Ikuo Uchiyama

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

2014

Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score.

Hirokazu Chiba, Ikuo Uchiyama

BMC Bioinform., 2014

2013

MBGD update 2013: the microbial genome database for exploring the diversity of microbial world.

Ikuo Uchiyama, Motohiro Mihara, Hiroyo Nishide, Hirokazu Chiba

Nucleic Acids Res., 2013

2010

MBGD update 2010: toward a comprehensive resource for exploring microbial genome diversity.

Ikuo Uchiyama, Toshio Higuchi, Mikihiko Kawai

Nucleic Acids Res., 2010

2007

MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups.

Ikuo Uchiyama

Nucleic Acids Res., 2007

2006

CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes.

Ikuo Uchiyama, Toshio Higuchi, Ichizo Kobayashi

BMC Bioinform., 2006

2003

MBGD: microbial genome database for comparative analysis.

Ikuo Uchiyama

Nucleic Acids Res., 2003

1997

Automatic Construction of Knowledge Base from Biological Papers.

Yoshihiro Ohta, Yasunori Yamamoto, Tomoko Okazaki, Ikuo Uchiyama, Toshihisa Takagi

Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

1994

Gnome - an Internet-based sequence analysis tool.

Kenta Nakai, T. Tokimori, A. Ogiwara, Ikuo Uchiyama, T. Niiyama

Comput. Appl. Biosci., 1994