Jin-Dong Kim

Proceedings of the Eleventh International Conference on Language Resources and Evaluation, 2018

A Quantitative Evaluation of Natural Language Question Interpretation for Question Answering Systems.

[BibT_eX]

[DOI]

Proceedings of the Semantic Technology - 8th Joint International Conference, 2018

Trigger Words Detection by Integrating Attention Mechanism into Bi-LSTM Neural Network - A Case Study in PubMED-Wide Trigger Words Detection for Pancreatic Cancer.

[BibT_eX]

[DOI]

Kevin Bretonnel Cohen

Ruiying Chen

Yuxing Wang

Jingbo Xia

Proceedings of the Chinese Computational Linguistics and Natural Language Processing Based on Naturally Annotated Big Data, 2018

Guideline Design of an Active Gene Annotation Corpus for the Purpose of Drug Repurposing.

[BibT_eX]

[DOI]

Kevin Bretonnel Cohen

Jingbo Xia

Proceedings of the 11th International Congress on Image and Signal Processing, 2018

2017

Biomedical Natural Language Processing.

[BibT_eX]

[DOI]

Axel-Cyrille Ngonga Ngomo

Comput. Linguistics, 2017

SIGIR 2017 Workshop on Open Knowledge Base and Question Answering (OKBQA2017).

[BibT_eX]

[DOI]

Proceedings of the 40th International ACM SIGIR Conference on Research and Development in Information Retrieval, 2017

OKBQA: an Open Collaboration Framework for Development of Natural Language Question-Answering over Knowledge Bases.

[BibT_eX]

[DOI]

Axel-Cyrille Ngonga Ngomo

Christina Unger

Proceedings of the ISWC 2017 Posters & Demonstrations and Industry Tracks co-located with 16th International Semantic Web Conference (ISWC 2017), Vienna, Austria, October 23rd - to, 2017

2016

Refactoring the Genia Event Extraction Shared Task Toward a General Framework for IE-Driven KB Development.

[BibT_eX]

[DOI]

Proceedings of the 4th BioNLP Shared Task Workshop, BioNLP 2016, 2016

2015

Extending the evaluation of Genia Event task toward knowledge base construction and comparison to Gene Regulation Ontology task.

[BibT_eX]

[DOI]

Dietrich Rebholz-Schuhmann

Jung-Jae Kim

Xu Han

BMC Bioinform., December, 2015

Dynamic Join Order Optimization for SPARQL Endpoint Federation.

[BibT_eX]

[DOI]

Hongyan Wu

Atsuko Yamaguchi

Dietrich Rebholz-Schuhmann

Proceedings of the 11th International Workshop on Scalable Semantic Web Knowledge Base Systems co-located with 14th International Semantic Web Conference (ISWC 2015), 2015

2014

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

[BibT_eX]

[DOI]

J. Biomed. Semant., 2014

2013

Introducing glycomics data into the Semantic Web.

[BibT_eX]

[DOI]

Kiyoko F. Aoki-Kinoshita

J. Biomed. Semant., 2013

Literature Mining Solutions for Life Science Research.

[BibT_eX]

[DOI]

Jörg Hakenberg

Goran Nenadic

Adv. Bioinformatics, 2013

A Generalized LCS Algorithm and Its Application to Corpus Alignment.

[BibT_eX]

[DOI]

Proceedings of the Sixth International Joint Conference on Natural Language Processing, 2013

Visualizing ontology mappings to help ontology engineers identify relevant ontologies for their reuse.

[BibT_eX]

[DOI]

Proceedings of the 4th International Conference on Biomedical Ontology, 2013

Overview of BioNLP Shared Task 2013.

[BibT_eX]

[DOI]

Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

The Genia Event Extraction Shared Task, 2013 Edition - Overview.

[BibT_eX]

[DOI]

Yasunori Yamamoto

Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

Evaluation of SPARQL query generation from natural language questions.

[BibT_eX]

[DOI]

K. Bretonnel Cohen

Proceedings of the Joint Workshop on NLP&LOD and SWAIE: Semantic Web, 2013

2012

Improving protein coreference resolution by simple semantic classification.

[BibT_eX]

[DOI]

BMC Bioinform., 2012

The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011.

[BibT_eX]

[DOI]

BMC Bioinform., 2012

Visual Presentation of Mappings Between Biomedical Ontologies.

[BibT_eX]

[DOI]

Simon Kocbek

Jean-Luc Perret

Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

Boosting the protein name recognition performance by bootstrapping on selected text.

[BibT_eX]

[DOI]

Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

New Resources and Perspectives for Biomedical Event Extraction.

[BibT_eX]

[DOI]

Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

PubAnnotation - a persistent and sharable corpus and annotation repository.

[BibT_eX]

[DOI]

Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

CSAF - a community-sourcing annotation framework.

[BibT_eX]

[DOI]

Proceedings of the Sixth Linguistic Annotation Workshop, 2012

2011

Extracting Bio-molecular Events from literature - the BioNLP'09 Shared Task.

[BibT_eX]

[DOI]

Comput. Intell., 2011

U-Compare bio-event meta-service: compatible BioNLP event extraction services.

[BibT_eX]

[DOI]

BMC Bioinform., 2011

AGRA: analysis of gene ranking algorithms.

[BibT_eX]

[DOI]

Bioinform., 2011

Discriminative Optimization of String Similarity and Its Application to Biomedical Abbreviation Clustering.

[BibT_eX]

[DOI]

Proceedings of the 10th International Conference on Machine Learning and Applications and Workshops, 2011

Poster: Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from PubMed publications.

[BibT_eX]

[DOI]

Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

BioNLP Shared Task 2011: Supporting Resources.

[BibT_eX]

[DOI]

Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

Overview of BioNLP 2011 Protein Coreference Shared Task.

[BibT_eX]

[DOI]

Ngan L. T. Nguyen

Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

Overview of Genia Event Task in BioNLP Shared Task 2011.

[BibT_eX]

[DOI]

Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

Overview of BioNLP Shared Task 2011.

[BibT_eX]

[DOI]

Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

Parsing Natural Language Queries for Life Science Knowledge.

[BibT_eX]

[DOI]

Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, 2011

Discriminative Application of String Similarity Methods to Chemical and Non-chemical Names for Biomedical Abbreviation Clustering.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2010

Improving the Inter-Corpora Compatibility for protein Annotations.

[BibT_eX]

[DOI]

J. Bioinform. Comput. Biol., 2010

A Re-Evaluation of Biomedical Named Entity-Term Relations.

[BibT_eX]

[DOI]

J. Bioinform. Comput. Biol., 2010

Event Extraction with Complex Event Classification Using Rich Features.

[BibT_eX]

[DOI]

J. Bioinform. Comput. Biol., 2010

Event Extraction for Post-Translational Modifications.

[BibT_eX]

[DOI]

Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010

Natural Language Query Processing for Life Science Knowledge - Position Paper.

[BibT_eX]

[DOI]

Proceedings of the Active Media Technology, 6th International Conference, 2010

Extracting Protein Sub-cellular Localizations from Literature.

[BibT_eX]

[DOI]

Proceedings of the Active Media Technology, 6th International Conference, 2010

2009

Investigating heterogeneous protein annotations toward cross-corpora utilization.

[BibT_eX]

[DOI]

BMC Bioinform., 2009

GuideLink: A Corpus Annotation System that Integrates the Management of Annotation Guidelines.

[BibT_eX]

[DOI]

Proceedings of the 23rd Pacific Asia Conference on Language, Information and Computation, 2009

Opinion classification with tree kernel SVM using linguistic modality analysis.

[BibT_eX]

[DOI]

Takeshi S. Kobayakawa

Proceedings of the 18th ACM Conference on Information and Knowledge Management, 2009

Bridging the Gap between Domain-Oriented and Linguistically-Oriented Semantics.

[BibT_eX]

[DOI]

Sumire Uematsu

Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, 2009

Static Relations: a Piece in the Biomedical Information Extraction Puzzle.

[BibT_eX]

[DOI]

Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, 2009

Incorporating GENETAG-style annotation to GENIA corpus.

[BibT_eX]

[DOI]

Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, 2009

Overview of BioNLP'09 Shared Task on Event Extraction.

[BibT_eX]

[DOI]

Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009

2008

New challenges for text mining: mapping between text and manually curated pathways.

[BibT_eX]

[DOI]

BMC Bioinform., 2008

Corpus annotation for mining biomedical events from literature.

[BibT_eX]

[DOI]

Tomoko Ohta

BMC Bioinform., 2008

Challenges in Pronoun Resolution System for Biomedical Text.

[BibT_eX]

[DOI]

Ngan L. T. Nguyen

Proceedings of the International Conference on Language Resources and Evaluation, 2008

Exploring Domain Differences for the Design of a Pronoun Resolution System for Biomedical Text.

[BibT_eX]

[DOI]

Ngan L. T. Nguyen

Proceedings of the COLING 2008, 2008

Raising the Compatibility of Heterogeneous Annotations: A Case Study on.

[BibT_eX]

[DOI]

Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, 2008

Prediction of Protein Sub-cellular Localization using Information from Texts and Sequences.

[BibT_eX]

[DOI]

Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, 2008

From Text to Pathway: Corpus Annotation for Knowledge Acquisition from Biomedical Literature.

[BibT_eX]

[DOI]

Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008

2006

Automatic recognition of topic-classified relations between prostate cancer and genes using MEDLINE abstracts.

[BibT_eX]

[DOI]

BMC Bioinform., 2006

Automatic Recognition of Topic-Classified Relations between Prostate Cancer and Genes from Medline Abstracts.

[BibT_eX]

[DOI]

Proceedings of the Second International Symposium on Semantic Mining in Biomedicine, 2006

Extraction of Gene-Disease Relations from Medline Using Domain Dictionaries and Machine Learning.

[BibT_eX]

[DOI]

Proceedings of the Biocomputing 2006, 2006

Linguistic and Biological Annotations of Biological Interaction Events.

[BibT_eX]

[DOI]

Proceedings of the Fifth International Conference on Language Resources and Evaluation, 2006

An Intelligent Search Engine and GUI-based Efficient MEDLINE Search Tool Based on Deep Syntactic Parsing.

[BibT_eX]

[DOI]

Proceedings of the ACL 2006, 2006

2005

Topic Document Model Approach for Naive Bayes Text Classification.

[BibT_eX]

[DOI]

Sang-Bum Kim

Hae-Chang Rim

IEICE Trans. Inf. Syst., 2005

Developing a Robust Part-of-Speech Tagger for Biomedical Text.

[BibT_eX]

[DOI]

Proceedings of the Advances in Informatics, 2005

2004

Word Folding: Taking the Snapshot of Words Instead of the Whole.

[BibT_eX]

[DOI]

Proceedings of the Natural Language Processing, 2004

Introduction to the Bio-entity Recognition Task at JNLPBA.

[BibT_eX]

[DOI]

Nigel Collier

Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications, 2004

2003

GENIA corpus - a semantically annotated corpus for bio-textmining.

[BibT_eX]

[DOI]

Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

Encoding Biomedical Resources in TEI: The Case of the GENIA Corpus.

[BibT_eX]

[DOI]

Proceedings of the Workshop on Natural Language Processing in Biomedicine, 2003

Self-Organizing Markov Models and Their Application to Part-of-Speech Tagging.

[BibT_eX]

[DOI]

Hae-Chang Rim

Proceedings of the 41st Annual Meeting of the Association for Computational Linguistics, 2003

Stretching TEI: Converting the Genia Corpus.

[BibT_eX]

[DOI]

Proceedings of 4th International Workshop on Linguistically Interpreted Corpora, 2003

2000

KCAT: A Korean Corpus Annotating Tool Minimizing Human Intervention.

[BibT_eX]

[DOI]

Proceedings of the COLING 2000, 18th International Conference on Computational Linguistics, Proceedings of the Conference, 2 Volumes, July 31, 2000

1999

HMM Specialization with Selective Lexicalization.

[BibT_eX]

[DOI]