Sven Bergmann

According to our database, Sven Bergmann authored at least 21 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

PascalX: a Python library for GWAS gene and pathway enrichment tests.

Daniel Krefl, Alessandro Brandulas Cammarata, Sven Bergmann

Bioinform., May, 2023

2022

Cross-GWAS coherence test at the gene and pathway level.

Daniel Krefl, Sven Bergmann

PLoS Comput. Biol., September, 2022

Estimating RNA dynamics using one time point for one sample in a single-pulse metabolic labeling experiment.

Micha Hersch, Adriano Biasini, Ana C. Marques, Sven Bergmann

BMC Bioinform., 2022

2020

MONET: a toolbox integrating top-performing methods for network modularization.

Mattia Tomasoni, Sergio Gómez, Jake Crawford, Weijia Zhang, Sarvenaz Choobdar, Daniel Marbach, Sven Bergmann

Bioinform., 2020

2019

Interoperable and scalable data analysis with microservices: applications in metabolomics.

Payam Emami Khoonsari, Pablo A. Moreno, Sven Bergmann, Joachim Burman, Marco Capuccini, Matteo Carone, Marta Cascante, Pedro de Atauri, Carles Foguet, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Sijin He, Stephanie Herman, David Johnson, Namrata Kale, Anders Larsson, Steffen Neumann, Kristian Peters, Luca Pireddu, Philippe Rocca-Serra, Pierrick Roger, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M. Salek, Susanna-Assunta Sansone, Daniel Schober, Vitaly A. Selivanov, Etienne A. Thévenot, Michael van Vliet, Gianluigi Zanetti, Christoph Steinbeck, Kim Kultima, Ola Spjuth

Bioinform., 2019

2017

Metabomatching: Using genetic association to identify metabolites in proton NMR spectroscopy.

Rico Rueedi, Roger Mallol, Johannes Raffler, David Lamparter, Nele Friedrich, Peter Vollenweider, Gérard Waeber, Gabi Kastenmüller, Zoltán Kutalik, Sven Bergmann

PLoS Comput. Biol., 2017

Genome-Wide Association between Transcription Factor Expression and Chromatin Accessibility Reveals Regulators of Chromatin Accessibility.

David Lamparter, Daniel Marbach, Rico Rueedi, Sven Bergmann, Zoltán Kutalik

PLoS Comput. Biol., 2017

2016

Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics.

David Lamparter, Daniel Marbach, Rico Rueedi, Zoltán Kutalik, Sven Bergmann

PLoS Comput. Biol., 2016

2014

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.

Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel

Nucleic Acids Res., 2014

2012

Iterative Estimation of Rigid-Body Transformations - Application to Robust Object Tracking and Iterative Closest Point.

Micha Hersch, Aude Billard, Sven Bergmann

J. Math. Imaging Vis., 2012

Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human.

Barbara Piasecka, Marc Robinson-Rechavi, Sven Bergmann

Bioinform., 2012

2011

Using Transcription Modules to Identify Expression Clusters Perturbed in Williams-Beuren Syndrome.

Charlotte N. Henrichsen, Gábor Csárdi, Marie-Thérèse Zabot, Carmela Fusco, Sven Bergmann, Giuseppe Merla, Alexandre Reymond

PLoS Comput. Biol., 2011

A New Scaling Measure Quantifies the Conservation of Proportions of Gene Expression Profiles in Developing Organic Shapes.

Aitana Morton de Lachapelle, Sven Bergmann

Proceedings of the First Interdisciplinary Workshop on SHAPES, 2011

Connecting Points by Smooth Connection Functions Defines Shapes in the Smoothest Possible Way.

Alex Alon, Sven Bergmann

Proceedings of the First Interdisciplinary Workshop on SHAPES, 2011

2010

FastEpistasis: a high performance computing solution for quantitative trait epistasis.

Thierry Schüpbach, Ioannis Xenarios, Sven Bergmann, Karen Kapur

Bioinform., 2010

ExpressionView - an interactive viewer for modules identified in gene expression data.

Andreas Lüscher, Gábor Csárdi, Aitana Morton de Lachapelle, Zoltán Kutalik, Bastian Peter, Sven Bergmann

Bioinform., 2010

Modular analysis of gene expression data with R.

Gábor Csárdi, Zoltán Kutalik, Sven Bergmann

Bioinform., 2010

EuroDia: a beta-cell gene expression resource.

Robin Liechti, Gábor Csárdi, Sven Bergmann, Frédéric Schütz, Thierry Sengstag, Sylvia F. Boj, Joan-Marc Servitja, Jorge Ferrer, Leentje Van Lommel, Frans Schuit, Sonia Klinger, Bernard Thorens, Najib Naamane, Decio L. Eizirik, Lorella Marselli, Marco Bugliani, Piero Marchetti, Stephanie Lucas, Cecilia Holm, C. Victor Jongeneel, Ioannis Xenarios

Database J. Biol. Databases Curation, 2010

2006

Set-up of a Unit-Selection Synthesis with a Prominent Voice.

Stefan Breuer, Sven Bergmann, Ralf Dragon, Sebastian Möller

Proceedings of the Fifth International Conference on Language Resources and Evaluation, 2006

2004

Defining transcription modules using large-scale gene expression data.

Jan Ihmels, Sven Bergmann, Naama Barkai

Bioinform., 2004

Challenges and prospects in the analysis of large-scale gene expression data.

Jan Ihmels, Sven Bergmann

Briefings Bioinform., 2004